View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1074_low_29 (Length: 318)
Name: NF1074_low_29
Description: NF1074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1074_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 3e-94; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 109 - 311
Target Start/End: Complemental strand, 5980716 - 5980514
Alignment:
| Q |
109 |
caggctctgatcctcctagcagcttctttgacatcaaaatctacactcacaagtggactagaagaattttttaatgagcaaaaacaagattcaaatttga |
208 |
Q |
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||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||| |
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| T |
5980716 |
caggcactgagcctcctagcagcttctttgacatcaaaatctacactcacaagtggactagaagaatttcttaatatgccaaaacaagattcaaatttga |
5980617 |
T |
|
| Q |
209 |
cctcaaagtgtgttcaaacttgtagacatgataaagttgcaaagaagcctaaacttgtacactgagttattattcagttgcagtttcatttcaacctttg |
308 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5980616 |
cctcaaagtgtgttcaaactagtagacatgataaagttgcaaagaagcctaaacttgtacactgagttattattcagttgcagtttcatttcaacctttg |
5980517 |
T |
|
| Q |
309 |
ttt |
311 |
Q |
| |
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||| |
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|
| T |
5980516 |
ttt |
5980514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 109 - 307
Target Start/End: Complemental strand, 5995410 - 5995211
Alignment:
| Q |
109 |
caggctctgatcctcctagcagcttctttgacatcaaaatcta-cactcacaagtggactagaagaattttttaatgagcaaaaacaagattcaaatttg |
207 |
Q |
| |
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|||||| ||| |||||| |||||||| ||||||||||||| || |||| || |||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
5995410 |
caggctttgagcctccttgcagcttccttgacatcaaaatttaacactgactagtggactgaaagaattttttaatgagcaaaaacaagattcaaatttg |
5995311 |
T |
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| Q |
208 |
acctcaaagtgtgttcaaacttgtagacatgataaagttgcaaagaagcctaaacttgtacactgagttattattcagttgcagtttcatttcaaccttt |
307 |
Q |
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||||||||||||||||||||| |||| | ||||||||||||||||||||||||||| | | ||||||||||||| ||||||||||||||||||||||||| |
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| T |
5995310 |
acctcaaagtgtgttcaaactagtaggcttgataaagttgcaaagaagcctaaactagaagactgagttattatacagttgcagtttcatttcaaccttt |
5995211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 121 - 296
Target Start/End: Complemental strand, 5993036 - 5992860
Alignment:
| Q |
121 |
ctcctagcagcttctttgacatcaaaatctacactcacaagt-ggactagaagaattttttaatgagcaaaaacaagattcaaatttgacctcaaagtgt |
219 |
Q |
| |
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||||| |||||||| ||||||||||||| |||||| || ||| ||||||||||| ||| ||||| || |||||| ||||||||||||| ||||||| | |
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| T |
5993036 |
ctccttgcagcttccttgacatcaaaatttacactgactagtcggactagaagactttcataatgtgctaaaacacaattcaaatttgacgtcaaagtat |
5992937 |
T |
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| Q |
220 |
gttcaaacttgtagacatgataaagttgcaaagaagcctaaacttgtacactgagttattattcagttgcagtttca |
296 |
Q |
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| T |
5992936 |
atacaaactagtagacttgatgaacttgcaaatgatcctaaaccataagattgaattattattcagttgcagtttca |
5992860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 109 - 217
Target Start/End: Original strand, 5632787 - 5632895
Alignment:
| Q |
109 |
caggctctgatcctcctagcagcttctttgacatcaaaatctacactcacaagtggactagaagaattttttaatgagcaaaaacaagattcaaatttga |
208 |
Q |
| |
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|||||| ||| ||| || |||||||| | |||||||||| |||||| || |||||||||||| | ||||||| || || ||||||||| |||||||||| |
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| T |
5632787 |
caggctttgagcctacttgcagcttcccttacatcaaaatttacactgactagtggactagaaaacttttttattgtgccaaaacaagaatcaaatttga |
5632886 |
T |
|
| Q |
209 |
cctcaaagt |
217 |
Q |
| |
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| ||||||| |
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|
| T |
5632887 |
catcaaagt |
5632895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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