View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1074_low_34 (Length: 303)
Name: NF1074_low_34
Description: NF1074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1074_low_34 |
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Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 50 - 259
Target Start/End: Original strand, 386278 - 386487
Alignment:
| Q |
50 |
agtgcaacaaagcataaggcccactcgtttatgtgtggacttttcacagtccccgaacagaggggacaaccggtgttgacttttgtaagggaattctttc |
149 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
386278 |
agtgcaacaaagcataaggcccactcgtttatgtgtggacttttcacaggccccgaacagaggggacaaccggtgttgacttttgtaagggaattctttc |
386377 |
T |
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| Q |
150 |
aaagtattgattatgaattggaggaaggtgctgcaaagtactttgtcaatgttcttctcaattacctagttcttatgggacagataaatcgagcttgatg |
249 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
386378 |
gaagtattgattatgaattggaggaaggtgctgcaaagtactttgtcaatgttcttctcaattacctagttcttatgggacagataaatcgagctcgatg |
386477 |
T |
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| Q |
250 |
tgtttggaag |
259 |
Q |
| |
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|||||||||| |
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| T |
386478 |
tgtttggaag |
386487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 50 - 259
Target Start/End: Complemental strand, 38729264 - 38729055
Alignment:
| Q |
50 |
agtgcaacaaagcataaggcccactcgtttatgtgtggacttttcacagtccccgaacagaggggacaaccggtgttgacttttgtaagggaattctttc |
149 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||| |||||||| |||||||||| |
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| T |
38729264 |
agtgcaacaaagcataaggcgcactcgtttatgtgtggactattcacaggccccgaacagaggggacagccggtgttgacatttgtaagagaattctttc |
38729165 |
T |
|
| Q |
150 |
aaagtattgattatgaattggaggaaggtgctgcaaagtactttgtcaatgttcttctcaattacctagttcttatgggacagataaatcgagcttgatg |
249 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | || |
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| T |
38729164 |
aaagtattgattatgaattggaggaaggtgctgcaaagtactttgtcaatgttcttctcaattatctagttcttatgggacagataaatcgagctcggtg |
38729065 |
T |
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| Q |
250 |
tgtttggaag |
259 |
Q |
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|||||||||| |
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| T |
38729064 |
tgtttggaag |
38729055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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