View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1074_low_37 (Length: 274)
Name: NF1074_low_37
Description: NF1074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1074_low_37 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 51 - 206
Target Start/End: Complemental strand, 441351 - 441192
Alignment:
| Q |
51 |
atttatgtttggttttaaaaaa-ggtaaattgtttctggatagcaatcgcacgtt---cagactctagtatttgaagcttttgcggtaaaccaaatcaat |
146 |
Q |
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|||| ||||||| ||||||||| ||||||||| ||||||||||||| ||||||| |||||||||||||| ||||||||| |||| | |||||||||| |
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| T |
441351 |
atttttgtttggctttaaaaaacggtaaattgcttctggatagcaactgcacgtttaccagactctagtattcgaagcttttacggtgagccaaatcaat |
441252 |
T |
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| Q |
147 |
tctacacttttgttaaacaattatattatataatattccagtttgtctattatgtccttg |
206 |
Q |
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| T |
441251 |
tctacacttttgttaaacagttatattatataatattccagtttgtctattttgtccttg |
441192 |
T |
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Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 51 - 238
Target Start/End: Complemental strand, 45781538 - 45781336
Alignment:
| Q |
51 |
atttatgtttggttttaaaaaaggtaaattgtttctggatagcaatcgcacgtt---cagactctagtatttgaagcttttgcggtaaaccaaatcaatt |
147 |
Q |
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| T |
45781538 |
atttatgtttgacttaaaaaaaggtaaattgtttctgaatagcaaccacacgtttaccagactctaacatttgaagcttttgcggtgaaccaaatcaatt |
45781439 |
T |
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| Q |
148 |
ctacacttttgttaaacaat------------tatattatataatattccagtttgtctattatgtccttgcnnnnnnnnnnatatgtaaaccatgatta |
235 |
Q |
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| T |
45781438 |
ctatatttttattaaacaattctacactctagtatattatataatattccagtttgtctattatgtccttgcttttttttttatatgtaaaccatgatta |
45781339 |
T |
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| Q |
236 |
ttt |
238 |
Q |
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||| |
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| T |
45781338 |
ttt |
45781336 |
T |
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Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 51 - 157
Target Start/End: Complemental strand, 14565224 - 14565115
Alignment:
| Q |
51 |
atttatgtttggttttaaaaaaggtaaattgtttctggatagcaatcgcacgtt---cagactctagtatttgaagcttttgcggtaaaccaaatcaatt |
147 |
Q |
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|||||||||||| |||||||||||||||||| ||||||||||||| ||||||| |||||||||||||| ||||||||| |||| | ||||||||||| |
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| T |
14565224 |
atttatgtttggctttaaaaaaggtaaattgcttctggatagcaactgcacgtttaccagactctagtattcgaagcttttacggtgagccaaatcaatt |
14565125 |
T |
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| Q |
148 |
ctacactttt |
157 |
Q |
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|||||||||| |
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| T |
14565124 |
ctacactttt |
14565115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 206
Target Start/End: Complemental strand, 19600029 - 19599939
Alignment:
| Q |
116 |
atttgaagcttttgcggtaaaccaaatcaattctacacttttgttaaacaattatattatataatattccagtttgtctattatgtccttg |
206 |
Q |
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||||||||||| ||||| || | || ||| ||||| ||||| |||||||||||| ||||||||||| || ||||||| |||||| ||||| |
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| T |
19600029 |
atttgaagcttctgcggcaacctaactcatatctactcttttattaaacaattattttatataatatccctgtttgtccattatgcccttg |
19599939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 51 - 157
Target Start/End: Original strand, 252151 - 252260
Alignment:
| Q |
51 |
atttatgtttggttttaaaaaaggtaaattgtttctggatagcaatcgcacgtt---cagactctagtatttgaagcttttgcggtaaaccaaatcaatt |
147 |
Q |
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|||||||||||| |||||||||||||||||| ||||||||||||| ||||||| |||||||||||||| ||||||||| |||| | ||||||||||| |
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| T |
252151 |
atttatgtttggctttaaaaaaggtaaattgcttctggatagcaactgcacgtttaccagactctagtattcgaagcttttacggtgagccaaatcaatt |
252250 |
T |
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| Q |
148 |
ctacactttt |
157 |
Q |
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| T |
252251 |
ctacactttt |
252260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 205
Target Start/End: Original strand, 8040859 - 8040948
Alignment:
| Q |
116 |
atttgaagcttttgcggtaaaccaaatcaattctacacttttgttaaacaattatattatataatattccagtttgtctattatgtcctt |
205 |
Q |
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||||||||||| ||||| || | || |||||||||| ||||| |||||||||||| ||||||||||| || |||||| |||||| |||| |
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| T |
8040859 |
atttgaagcttatgcggcaaccaaactcaattctactcttttattaaacaattattttatataatatccctgtttgttcattatgccctt |
8040948 |
T |
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