View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1074_low_38 (Length: 265)
Name: NF1074_low_38
Description: NF1074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1074_low_38 |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 8974352 - 8974587
Alignment:
| Q |
1 |
aatagaaaaaatttctttcaagataacatcttttggtgctaaaccagctcctagcgtggatttttatagttcaagaggtccttcagaaagttgcccaaat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
8974352 |
aatagaaaaaatttctttcaagataacatcttttggtgctaaaccagctcctagcgtggatttttatagttcaagaggtccttctgaaagttgcccaaat |
8974451 |
T |
|
| Q |
101 |
gttttgaaacctgacattacaggtcctggtacatcaatcttagctgcatggcctacaaatattcctgtgttggagtttgggtcaagtaaagtcttcaaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
8974452 |
gttttgaaacctgacattacaggtcctggtacatcaatcttagctgcatggcctacaaatattcctgtgttggagtttgggtcacgtaaagtcttcaaca |
8974551 |
T |
|
| Q |
201 |
agttcaattttttaagtggaacatctatgtcatctc |
236 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
8974552 |
agttcaattttttaagtggaacatctatgtcatctc |
8974587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 8962956 - 8963188
Alignment:
| Q |
1 |
aatagaaaaaatttctttcaagataacatcttttggtgctaaaccagctcctagcgtggatttttatagttcaagaggtccttcagaaagttgcccaaat |
100 |
Q |
| |
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|||||||||||| ||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||| ||||| || ||| | ||||| ||| || |
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| T |
8962956 |
aatagaaaaaatgtctttcaagattacatcttttggtgctaaaccagtacctagggtggatttttatagttctagagggccatcaaagagttgtccatat |
8963055 |
T |
|
| Q |
101 |
gttttgaaacctgacattacaggtcctggtacatcaatcttagctgcatggcctacaaatattcctgtgttggagtttgggtcaagtaaagtcttcaaca |
200 |
Q |
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| T |
8963056 |
gtgttgaaacctgacattacagctcccggtacgtcaatcttagctgcatggcctccaaatgttcctgtgttggattttgggtctcataaagtcgtcaaca |
8963155 |
T |
|
| Q |
201 |
agttcaattttttaagtggaacatctatgtcat |
233 |
Q |
| |
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||||||||||||||| ||||||||||||||||| |
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| T |
8963156 |
agttcaattttttaactggaacatctatgtcat |
8963188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 64 - 229
Target Start/End: Original strand, 8958005 - 8958170
Alignment:
| Q |
64 |
ttatagttcaagaggtccttcagaaagttgcccaaatgttttgaaacctgacattacaggtcctggtacatcaatcttagctgcatggcctacaaatatt |
163 |
Q |
| |
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||||||||||||||| |||||| | ||||| ||| || |||||||||||||||| || | |||||||||| ||||||||||||||||| |||||| || |
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| T |
8958005 |
ttatagttcaagagggccttcaaatagttgtccatatattttgaaacctgacatcactgctcctggtacaaatatcttagctgcatggcccacaaatgtt |
8958104 |
T |
|
| Q |
164 |
cctgtgttggagtttgggtcaagtaaagtcttcaacaagttcaattttttaagtggaacatctatg |
229 |
Q |
| |
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|||||| ||| || ||| | ||| ||||||||||||||||| | ||||||||||||||||| |
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| T |
8958105 |
cctgtgatgggtttggggactcataagatcttcaacaagttcaatgtgataagtggaacatctatg |
8958170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 67 - 233
Target Start/End: Complemental strand, 8946059 - 8945896
Alignment:
| Q |
67 |
tagttcaagaggtccttcagaaagttgcccaaatgttttgaaacctgacattacaggtcctggtacatcaatcttagctgcatggcctacaaatattcct |
166 |
Q |
| |
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|||||| ||||| || ||| | ||||| ||| |||| ||||||||||||||||| | ||||| |||||||||||||||||||||||| ||||| ||||| |
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| T |
8946059 |
tagttcgagaggaccatcaaatagttgtccatatgtcttgaaacctgacattacggctcctgatacatcaatcttagctgcatggcccacaaaacttcct |
8945960 |
T |
|
| Q |
167 |
gtgttggagtttgggtcaagtaaagtcttcaacaagttcaattttttaagtggaacatctatgtcat |
233 |
Q |
| |
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|||||||| || | | ||||||||||||||||||| ||||||| ||||||||||| ||||| |
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| T |
8945959 |
gtgttggatcctgtg---accgaagtcttcaacaagttcaaatttttaactggaacatctacgtcat |
8945896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 14 - 229
Target Start/End: Complemental strand, 19375989 - 19375774
Alignment:
| Q |
14 |
tctttcaagataacatcttttggtgctaaaccagctcctagcgtggatttttatagttcaagaggtccttcagaaagttgcccaaatgttttgaaacctg |
113 |
Q |
| |
|
|||||||||| |||| |||||||| ||||||| | ||||| || ||| |||||||||||||||| |||||| | | ||| ||| ||| |||||||| | |
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| T |
19375989 |
tctttcaagaaaacaatttttggtgttaaaccaacacctagtgttgatctttatagttcaagagggccttcaaataattgtccatttgtgttgaaacccg |
19375890 |
T |
|
| Q |
114 |
acattacaggtcctggtacatcaatcttagctgcatggcctacaaatattcctgtgttggagtttgggtcaagtaaagtcttcaacaagttcaatttttt |
213 |
Q |
| |
|
|||| || | || ||||||||||||||||||||||||||| |||||| ||| ||||||||| || ||| | |||||||||||||||||||||||| | |
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| T |
19375889 |
acatcactgctcttggtacatcaatcttagctgcatggccaacaaatgttcatgtgttggatttggggacttttaaagtcttcaacaagttcaatttgat |
19375790 |
T |
|
| Q |
214 |
aagtggaacatctatg |
229 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
19375789 |
aagtggaacatctatg |
19375774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 21687288 - 21687059
Alignment:
| Q |
1 |
aatagaaaaaatttctttcaagataacatcttttggtgctaaaccagctcctagcgtggatttttatagttcaagaggtccttcagaaagttgcccaaat |
100 |
Q |
| |
|
||||| ||| || |||||||||| |||| |||| |||| |||| || | ||||| |||||||||||||| ||||| || || ||| | ||||| ||| || |
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| T |
21687288 |
aatagcaaacatgtctttcaagaaaacagctttcggtgttaaatcaacacctagtgtggatttttatagctcaaggggaccatcaaatagttgtccatat |
21687189 |
T |
|
| Q |
101 |
gttttgaaacctgacattacaggtcctggtacatcaatcttagctgcatggcctacaaatattcctgtgttggagtttgggtcaagtaaagtcttcaaca |
200 |
Q |
| |
|
|| |||||||||||||| || | |||||||||||||||||||||||||||||| ||||| ||||||||| | |||||| | | ||||||| |||| |
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| T |
21687188 |
gtgttgaaacctgacatcactgctcctggtacatcaatcttagctgcatggcccacaaacgttcctgtgtccaattttggg---actgaagtctttaaca |
21687092 |
T |
|
| Q |
201 |
agttcaattttttaagtggaacatctatgtcat |
233 |
Q |
| |
|
| |||||||| || ||||||||||||||||| |
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| T |
21687091 |
acttcaatttgatagatggaacatctatgtcat |
21687059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 14 - 229
Target Start/End: Complemental strand, 34962895 - 34962680
Alignment:
| Q |
14 |
tctttcaagataacatcttttggtgctaaaccagctcctagcgtggatttttatagttcaagaggtccttcagaaagttgcccaaatgttttgaaacctg |
113 |
Q |
| |
|
||||||| || |||| |||||| |||||||||| ||||| || |||| |||||||||||||| || ||| | ||||| ||| ||| |||||||||| |
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|
| T |
34962895 |
tctttcatgaaaacagtttttggaactaaaccagcacctagtgttgattcatatagttcaagagggccatcatatagttgtccatttgtgttgaaacctg |
34962796 |
T |
|
| Q |
114 |
acattacaggtcctggtacatcaatcttagctgcatggcctacaaatattcctgtgttggagtttgggtcaagtaaagtcttcaacaagttcaatttttt |
213 |
Q |
| |
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||||||| | |||||||| || |||||||| ||||||||||||||| |||||||| |||| |||| ||| |||| | |||| ||| |||||||| | |
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|
| T |
34962795 |
acattactgcgcctggtacttcgatcttagcggcatggcctacaaatgttcctgtgatggaatttgagtctcataaaattttcagcaaattcaatttgat |
34962696 |
T |
|
| Q |
214 |
aagtggaacatctatg |
229 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
34962695 |
aagtggaacatctatg |
34962680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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