View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1074_low_4 (Length: 667)

Name: NF1074_low_4
Description: NF1074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1074_low_4
NF1074_low_4
[»] chr4 (6 HSPs)
chr4 (84-290)||(11567720-11567916)
chr4 (102-291)||(11566991-11567176)
chr4 (461-561)||(6054370-6054470)
chr4 (215-289)||(35298660-35298734)
chr4 (515-623)||(18440516-18440624)
chr4 (460-556)||(49683363-49683459)
[»] chr3 (5 HSPs)
chr3 (84-279)||(7959220-7959415)
chr3 (102-292)||(7959953-7960144)
chr3 (460-622)||(22241083-22241245)
chr3 (460-549)||(3092715-3092803)
chr3 (536-572)||(15691217-15691253)
[»] chr5 (4 HSPs)
chr5 (84-289)||(5301857-5302056)
chr5 (215-289)||(28991647-28991721)
chr5 (102-187)||(5289417-5289503)
chr5 (209-257)||(24894558-24894606)
[»] chr1 (6 HSPs)
chr1 (215-291)||(37581053-37581129)
chr1 (215-291)||(37581604-37581680)
chr1 (223-289)||(32367294-32367360)
chr1 (223-279)||(32369591-32369648)
chr1 (502-565)||(33028221-33028284)
chr1 (245-287)||(7742153-7742195)
[»] chr2 (2 HSPs)
chr2 (222-290)||(17252911-17252979)
chr2 (480-643)||(28217303-28217460)
[»] chr7 (2 HSPs)
chr7 (502-621)||(26930-27049)
chr7 (503-556)||(24695311-24695364)
[»] chr8 (2 HSPs)
chr8 (518-572)||(34120566-34120620)
chr8 (465-556)||(34119961-34120050)


Alignment Details
Target: chr4 (Bit Score: 120; Significance: 5e-61; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 84 - 290
Target Start/End: Original strand, 11567720 - 11567916
Alignment:
Q  84 catgtagaaaaagttcatagagaaaacaaaagaagaagaaacggtttggaagtgccactacacgagagagaaatgctgcacgacagcttcattatttcca 183  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||    
T  11567720 catgtagaaaaagttcatagagaaaacaaaagaagaagaaacggtttggaagtgccactacacgagagagaaatactgcacgacaacttcaatatttcca 11567819  T
Q  184 aaaannnnnnnnnnnnnnnnnnaacataaataaatgacgtgtcaagttattagtggttgtttgtaaaaccttatgtgttaggtgcgtttgcatgcaagaa 283  Q
    ||||                  ||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  11567820 aaaa----------aaaattttaacataaataaatgaggtgttaagttattagtagttgtttgtaaaaccttatgtgttaggtgtgtttgcatgcaagaa 11567909  T

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Target: chr4; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 102 - 291
Target Start/End: Complemental strand, 11567176 - 11566991
Alignment:
Q  102 agagaaaacaaaagaagaagaaac-ggtttggaagtgccactacacgagagagaaatgctgcac-gacagcttcattatttccaaaaannnnnnnnnnnn 199  Q
    ||||||||||||||||||| |||  |||||||||||||||||||||||||| |||||||||||| |||| ||||| |||||||||                   
T  11567176 agagaaaacaaaagaagaaaaaaatggtttggaagtgccactacacgagagggaaatgctgcactgacaacttcaatatttccaa------ttttttttt 11567083  T
Q  200 nnnnnnaacataaataaatgacgtgtcaagttattagtggttgtttgtaaaaccttatgtgttaggtgcgtttgcatgcaagaatttctctt 291  Q
          ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||    
T  11567082 ttttttaacataaataaatgaggtgtcaagttattagtggttgtttgttaaaccttatgtgttaggtacgtttgcatgcaaaaatttctctt 11566991  T

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Target: chr4; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 461 - 561
Target Start/End: Original strand, 6054370 - 6054470
Alignment:
Q  461 gatgacaagaaatcatatcgggttttcagtccactttgagggtcatcttagagttaaagtagttagtttatatgtattttagtcgagttttgtaaataaa 560  Q
    |||||||||||||||||| || ||||||||| ||||| |  ||||| |||||||||||||||| | ||||| ||||||||||||| |||||||||| |||    
T  6054370 gatgacaagaaatcatataggattttcagtctacttttaacgtcattttagagttaaagtagtcaatttatgtgtattttagtcgtgttttgtaaagaaa 6054469  T
Q  561 t 561  Q
    |    
T  6054470 t 6054470  T

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Target: chr4; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 215 - 289
Target Start/End: Complemental strand, 35298734 - 35298660
Alignment:
Q  215 aaatgacgtgtcaagttattagtggttgtttgtaaaaccttatgtgttaggtgcgtttgcatgcaagaatttctc 289  Q
    |||||| |||| || |||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||    
T  35298734 aaatgaggtgttaaattattagtggttgtttgtaaaatcttatgtgttaggtgtgtttgcatgcaataatttctc 35298660  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 515 - 623
Target Start/End: Original strand, 18440516 - 18440624
Alignment:
Q  515 taaagtagttagtttatatgtattttagtcgagttttgtaaataaattgttcaaaagttatatggcgacaaaagtagggaaatagccttaaaaccatgga 614  Q
    |||| ||||||  ||||||||||||||||||||||||||||| ||||  ||||||| | |||    || ||||| || |||| | |||| ||||||||||    
T  18440516 taaattagttaacttatatgtattttagtcgagttttgtaaagaaatcattcaaaaatcatagaaagataaaagaagagaaaaatccttgaaaccatgga 18440615  T
Q  615 aatccaccc 623  Q
    |||||||||    
T  18440616 aatccaccc 18440624  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 460 - 556
Target Start/End: Original strand, 49683363 - 49683459
Alignment:
Q  460 tgatgacaagaaatcatatcgggttttcagtccactttgagggtcatcttagagttaaagtagttagtttatatgtattttagtcgagttttgtaaa 556  Q
    |||||||| |||||| |||  |||||| ||||| |||| |  ||||| |||||||| ||||||  ||||||| ||||||||||| ||||||||||||    
T  49683363 tgatgacaggaaatcttatatggtttttagtccccttttaaagtcattttagagttcaagtagcaagtttatttgtattttagtagagttttgtaaa 49683459  T

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Target: chr3 (Bit Score: 118; Significance: 7e-60; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 84 - 279
Target Start/End: Complemental strand, 7959415 - 7959220
Alignment:
Q  84 catgtagaaaaagttcatagagaaaacaaaagaagaagaaacggtttggaagtgccactacacgagagagaaatgctgcacgacagcttcattatttcca 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  7959415 catgtagaaaaagttcatagagaaaacaaaagaagaagaaacggtttggaagtgccactacacgagagagaaatgctgcacgacagcttcaatatttcca 7959316  T
Q  184 aaaannnnnnnnnnnnnnnnnnaacataaataaatgacgtgtcaagttattagtggttgtttgtaaaaccttatgtgttaggtgcgtttgcatgca 279  Q
    |||                   |||| |||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  7959315 aaatttttttttctatttttttaacaaaaataaatgaggtgtcaagttattagtagttgtttgtaaaaccgtatgtgttaggtgcgtttgcatgca 7959220  T

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Target: chr3; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 102 - 292
Target Start/End: Original strand, 7959953 - 7960144
Alignment:
Q  102 agagaaaacaaaagaagaagaaac-ggtttggaagtgccactacacgagagagaaatgctgcacgacagcttcattatttccaaaaannnnnnnnnnnnn 200  Q
    ||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||                   
T  7959953 agagaaaacaaaagaagaaaaaaatggtttggaagtgccactacacgagagagaaatgctgcacgacagcttcaatattttcaaatttttttattttatt 7960052  T
Q  201 nnnnnaacataaataaatgacgtgtcaagttattagtggttgtttgtaaaaccttatgtgttaggtgcgtttgcatgcaagaatttctcttc 292  Q
         || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  7960053 tttttaaaataaataaatgaggtgtcaagttattagtggttgtttgtaaaaccttatgtgttaggtgcgtttgcatacaagaatttctcttc 7960144  T

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Target: chr3; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 460 - 622
Target Start/End: Original strand, 22241083 - 22241245
Alignment:
Q  460 tgatgacaagaaatcatatcgggttttcagtccactttgagggtcatcttagagttaaagtagttagtttatatgtattttagtcgagttttgtaaataa 559  Q
    ||||||||  |||| |||| ||||||||| |||||||| || |||||  |||||||||||||| |||||||| |||||||||||| ||||||||||||||    
T  22241083 tgatgacataaaatgatattgggttttcattccacttttagagtcattgtagagttaaagtaggtagtttatctgtattttagtcaagttttgtaaataa 22241182  T
Q  560 attgttcaaaagttatatggcgacaaaagtagggaaatagccttaaaaccatggaaatccacc 622  Q
    ||  ||||||||| | |    |||||||  || ||||||||||| ||||||||||||||||||    
T  22241183 atcattcaaaagtcaaaaaatgacaaaacaagtgaaatagccttgaaaccatggaaatccacc 22241245  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 460 - 549
Target Start/End: Complemental strand, 3092803 - 3092715
Alignment:
Q  460 tgatgacaagaaatcatatcgggttttcagtccactttgagggtcatcttagagttaaagtagttagtttatatgtattttagtcgagtt 549  Q
    ||||||||||||||||||| || ||||| || |||||| || ||| | |||||| ||||||| |||||||| |||| |||||||||||||    
T  3092803 tgatgacaagaaatcatataggtttttc-gtgcacttttagagtcgttttagagataaagtaattagtttacatgtgttttagtcgagtt 3092715  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 536 - 572
Target Start/End: Complemental strand, 15691253 - 15691217
Alignment:
Q  536 attttagtcgagttttgtaaataaattgttcaaaagt 572  Q
    ||||||||||||||| ||||| |||||||||||||||    
T  15691253 attttagtcgagtttggtaaagaaattgttcaaaagt 15691217  T

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Target: chr5 (Bit Score: 114; Significance: 2e-57; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 84 - 289
Target Start/End: Original strand, 5301857 - 5302056
Alignment:
Q  84 catgtagaaaaagttcatagagaaaacaaaagaagaagaaacggtttggaagtgccactacacgagagagaaatgctgcacgacagcttcattatttcca 183  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  5301857 catgtagaaaaaaatcatagagaaaacaaaagaagaagaaacggtttggaagtgccactacacgagagagaaatgctgcaccacagcttcaatatttcca 5301956  T
Q  184 aaaannnnnnnnnnnnnnnnnnaacataaataaatgacgtgtcaagttattagtggttgtttgtaaaaccttatgtgttaggtgcgtttgcatgcaagaa 283  Q
    |                     ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  5301957 a------ttttttattttttttaacataaataaatgaggtgtcaagttattagtggttgtttgtaaaaccttatgtgttaggtgtgtttgcatgcaagaa 5302050  T

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Target: chr5; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 215 - 289
Target Start/End: Original strand, 28991647 - 28991721
Alignment:
Q  215 aaatgacgtgtcaagttattagtggttgtttgtaaaaccttatgtgttaggtgcgtttgcatgcaagaatttctc 289  Q
    |||||| |||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  28991647 aaatgaggtgttaacttattagtggttgtttgtaaaaccttatgtgttcggtgcgtttgcatgcaagaatttctc 28991721  T

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Target: chr5; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 102 - 187
Target Start/End: Complemental strand, 5289503 - 5289417
Alignment:
Q  102 agagaaaacaaaagaagaagaaac-ggtttggaagtgccactacacgagagagaaatgctgcacgacagcttcattatttccaaaaa 187  Q
    ||||||||||||||||||| |||  |||||| ||||| |||||||||||||||||||||||||||||||||||| |||||| |||||    
T  5289503 agagaaaacaaaagaagaaaaaaatggtttgaaagtggcactacacgagagagaaatgctgcacgacagcttcaatatttctaaaaa 5289417  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 209 - 257
Target Start/End: Original strand, 24894558 - 24894606
Alignment:
Q  209 ataaataaatgacgtgtcaagttattagtggttgtttgtaaaaccttat 257  Q
    |||||||||||| |||||||||| | |||| ||||||||||||||||||    
T  24894558 ataaataaatgaggtgtcaagttgtcagtgcttgtttgtaaaaccttat 24894606  T

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Target: chr1 (Bit Score: 69; Significance: 1e-30; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 215 - 291
Target Start/End: Complemental strand, 37581129 - 37581053
Alignment:
Q  215 aaatgacgtgtcaagttattagtggttgtttgtaaaaccttatgtgttaggtgcgtttgcatgcaagaatttctctt 291  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  37581129 aaatgaggtgtcaagttattagtggttgtttgtaaaatcttatgtgttaggtgcgtttgcatgcaagaatttctctt 37581053  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 215 - 291
Target Start/End: Original strand, 37581604 - 37581680
Alignment:
Q  215 aaatgacgtgtcaagttattagtggttgtttgtaaaaccttatgtgttaggtgcgtttgcatgcaagaatttctctt 291  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  37581604 aaatgaggtgtcaagttattagtggttgtttgtaaaatcttatgtgttaggtgtgtttgcatgcaagaatttctctt 37581680  T

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Target: chr1; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 223 - 289
Target Start/End: Complemental strand, 32367360 - 32367294
Alignment:
Q  223 tgtcaagttattagtggttgtttgtaaaaccttatgtgttaggtgcgtttgcatgcaagaatttctc 289  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  32367360 tgtcaagttattagtggttgtttgtaaaaccttatatgttaggtgcgtttgcatgcaataatttctc 32367294  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 223 - 279
Target Start/End: Original strand, 32369591 - 32369648
Alignment:
Q  223 tgtcaagttattagtggttgtttgtaaaacc-ttatgtgttaggtgcgtttgcatgca 279  Q
    ||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||    
T  32369591 tgtcaagttattagttgttgtttataaaacccttatgtgttaggtgcgtttgcatgca 32369648  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 502 - 565
Target Start/End: Complemental strand, 33028284 - 33028221
Alignment:
Q  502 gtcatcttagagttaaagtagttagtttatatgtattttagtcgagttttgtaaataaattgtt 565  Q
    ||||| ||||| ||||||||| ||||||| |||||| ||||| ||||||||||||| |||||||    
T  33028284 gtcattttagaattaaagtaggtagtttaaatgtatgttagttgagttttgtaaatgaattgtt 33028221  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 245 - 287
Target Start/End: Original strand, 7742153 - 7742195
Alignment:
Q  245 tgtaaaaccttatgtgttaggtgcgtttgcatgcaagaatttc 287  Q
    |||||||||||||  ||||||||| ||||||||||||||||||    
T  7742153 tgtaaaaccttatacgttaggtgcatttgcatgcaagaatttc 7742195  T

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Target: chr2 (Bit Score: 61; Significance: 8e-26; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 222 - 290
Target Start/End: Complemental strand, 17252979 - 17252911
Alignment:
Q  222 gtgtcaagttattagtggttgtttgtaaaaccttatgtgttaggtgcgtttgcatgcaagaatttctct 290  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  17252979 gtgtcaagttattagtggttgttcgtaaaaccttatgtgttaggtgcgtttgcatgcaaaaatttctct 17252911  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 480 - 643
Target Start/End: Original strand, 28217303 - 28217460
Alignment:
Q  480 gggttttcagtccactttgagggtcatcttagagttaaagtagttagtttatatgtattttagtcgagttttgtaaataaattgttcaaaagttatatgg 579  Q
    |||||||||||||||||| |  ||||    ||||||||||| ||||||| || | ||||||||| || | ||||||| |||| |||||||||| |||       
T  28217303 gggttttcagtccacttttaaagtca----agagttaaagtggttagtt-atgtttattttagttgattattgtaaagaaatagttcaaaagtaataaaa 28217397  T
Q  580 cgacaaaagtagggaaatagccttaaaaccatggaaatccaccctgaactagacaactttgtga 643  Q
     |||||||||||||||||||| || ||||| |||||||||| | ||||| |||||||| |||||    
T  28217398 tgacaaaagtagggaaatagctttgaaaccttggaaatcca-cttgaacaagacaactatgtga 28217460  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 502 - 621
Target Start/End: Complemental strand, 27049 - 26930
Alignment:
Q  502 gtcatcttagagttaaagtagttagtttatatgtattttagtcgagttttgtaaataaattgttcaaaagttatatggcgacaaaagtagggaaatagcc 601  Q
    ||||| ||||||| ||||||  |||||||| ||||||||||| ||||||| |||| |||| |||||||||| ||     |||||||| |  ||||||| |    
T  27049 gtcattttagagtgaaagtatgtagtttatgtgtattttagttgagttttataaagaaatcgttcaaaagtcatgaaaggacaaaagaaaagaaatagtc 26950  T
Q  602 ttaaaaccatggaaatccac 621  Q
    || |||| ||||||||||||    
T  26949 ttgaaacaatggaaatccac 26930  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 503 - 556
Target Start/End: Original strand, 24695311 - 24695364
Alignment:
Q  503 tcatcttagagttaaagtagttagtttatatgtattttagtcgagttttgtaaa 556  Q
    |||| ||||||| ||| ||||||||||||  |||||||| ||||||||||||||    
T  24695311 tcattttagagtaaaattagttagtttatgcgtattttaatcgagttttgtaaa 24695364  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 518 - 572
Target Start/End: Complemental strand, 34120620 - 34120566
Alignment:
Q  518 agtagttagtttatatgtattttagtcgagttttgtaaataaattgttcaaaagt 572  Q
    |||||||| ||||| ||| ||||||| |||||||||||| |||| ||||||||||    
T  34120620 agtagttaatttatgtgtgttttagttgagttttgtaaagaaatagttcaaaagt 34120566  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 465 - 556
Target Start/End: Complemental strand, 34120050 - 34119961
Alignment:
Q  465 acaagaaatcatatcgggttttcagtccactttgagggtcatcttagagttaaagtagttagtttatatgtattttagtcgagttttgtaaa 556  Q
    |||||||||||| |  ||| || |||||||||| || ||||| |||||| || |||||||| ||  ||||| ||||||| ||||||||||||    
T  34120050 acaagaaatcatttatggtatttagtccacttttagagtcattttagagatatagtagttaatt--tatgtgttttagttgagttttgtaaa 34119961  T

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