View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1074_low_40 (Length: 263)
Name: NF1074_low_40
Description: NF1074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1074_low_40 |
 | |
|
| [»] chr1 (4 HSPs) |
| |
|
| [»] chr2 (6 HSPs) |
| |
|
| [»] chr7 (7 HSPs) |
| |
|
| [»] scaffold0259 (1 HSPs) |
| |
|
| [»] scaffold0022 (1 HSPs) |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 30 - 260
Target Start/End: Complemental strand, 40888972 - 40888742
Alignment:
| Q |
30 |
ttcataacacgtggttcttcgttttcaacgatctgatggtcaaagtatgtctagaataagagaaatagtggctgcaatacatacacgaatttgagactta |
129 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
40888972 |
ttcataacacgtgattcttcgttttcaacgatctgatcgtcaaagtatgtctagagtaagagaa-tagtggctgcaatacatacacgaatttgagactta |
40888874 |
T |
|
| Q |
130 |
aa-tagtgttaaggaagtaaagctcctaaagtaagggccctagtcttggtcatgatttaattgaaaatgatagattatgacgttgaatttaatatgcttc |
228 |
Q |
| |
|
|| |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40888873 |
aagtagtgttaaggaagtaaagctcctaaggtaagggccctagtcttggccatgatttaattgaaaatgatagattatgacgttgaatttaatatgcttc |
40888774 |
T |
|
| Q |
229 |
ttgattcatggatgagtgaaaagatttattat |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
40888773 |
ttgattcatggatgagtgaaaagatttattat |
40888742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 154 - 263
Target Start/End: Complemental strand, 15990328 - 15990218
Alignment:
| Q |
154 |
ctaaagtaagggccctagtcttggtcatgatttaattgaaaatgatagattatgacgttgaatttaatatgcttcttga-ttcatggatgagtgaaaaga |
252 |
Q |
| |
|
|||| |||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||| |
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|
| T |
15990328 |
ctaaggtaagggctctagtcttgaccatgatttaactgaaaatgatagattatgacgttgaatttgatatgcttcttgatttaatggatgagtgaaaaga |
15990229 |
T |
|
| Q |
253 |
tttattatgtt |
263 |
Q |
| |
|
|||||||||| |
|
|
| T |
15990228 |
attattatgtt |
15990218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 159 - 257
Target Start/End: Complemental strand, 52641485 - 52641386
Alignment:
| Q |
159 |
gtaagggccctagtcttggtcatgatttaattgaaaatgatagattatgacgttgaatttaatatgcttcttgattc-atggatgagtgaaaagatttat |
257 |
Q |
| |
|
|||||||| ||||| ||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
52641485 |
gtaagggctctagttttgaccatgatttaattgaaaatgatagattatgatgttgaatttgatatgcttcttgactcaatggatgagtgaaaagatttat |
52641386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 197 - 263
Target Start/End: Original strand, 29453687 - 29453753
Alignment:
| Q |
197 |
gatagattatgacgttgaatttaatatgcttcttgattcatggatgagtgaaaagatttattatgtt |
263 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29453687 |
gatagattatgacattgaatttgatatgcttcttgattcatggatgagtgaaaagatttattatgtt |
29453753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 161 - 260
Target Start/End: Complemental strand, 19544811 - 19544712
Alignment:
| Q |
161 |
aagggccctagtcttggtcatgatttaattgaaaatgatagattatgacgttgaatttaatatgcttcttgattc-atggatgagtgaaaagatttatta |
259 |
Q |
| |
|
|||||| |||||| || ||||||| ||| ||||| |||||| |||||| |||||||| | ||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
19544811 |
aagggctctagtcatgatcatgatctaaatgaaagtgataggttatgatgttgaattga-tatgcttattgattcgatggatgagtgaaaagatttatta |
19544713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 159 - 263
Target Start/End: Complemental strand, 13380374 - 13380270
Alignment:
| Q |
159 |
gtaagggccctagtcttggtcatgatttaattgaaaatgatagattatgacgttgaatttaatatgcttcttgattcatggatgagtgaaaagatttatt |
258 |
Q |
| |
|
||||||| ||||||||| |||||||||| |||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
13380374 |
gtaagggttctagtcttgaccatgatttaagtgaaaatgataggttatgacgttgaatttgatatacttcttgattcatggatgagtgaaaagatttatt |
13380275 |
T |
|
| Q |
259 |
atgtt |
263 |
Q |
| |
|
||||| |
|
|
| T |
13380274 |
atgtt |
13380270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 179 - 263
Target Start/End: Complemental strand, 51443659 - 51443574
Alignment:
| Q |
179 |
catgatttaattgaaaatgatagattatgacgttgaatttaatatgcttcttga-ttcatggatgagtgaaaagatttattatgtt |
263 |
Q |
| |
|
|||||||| | ||||||||||||||||||| ||||||||| ||||||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
51443659 |
catgatttgaatgaaaatgatagattatgatgttgaatttgatatgcttcttgatttaatggatgagtgaaaagatttattatgtt |
51443574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 154 - 263
Target Start/End: Complemental strand, 31654732 - 31654623
Alignment:
| Q |
154 |
ctaaagtaagggccctagtcttggtcatgatttaattgaaaatgatagattatgacgttgaatttaatatgcttcttga-ttcatggatgagtgaaaaga |
252 |
Q |
| |
|
||||| ||||||| ||||||||| |||| ||||| ||||||||||||||||||| |||| |||| ||||||||||||| || ||||||||||||||||| |
|
|
| T |
31654732 |
ctaaaataagggctctagtcttgaccatg-tttaaatgaaaatgatagattatgatgttggatttgatatgcttcttgatttaatggatgagtgaaaaga |
31654634 |
T |
|
| Q |
253 |
tttattatgtt |
263 |
Q |
| |
|
|||||| |||| |
|
|
| T |
31654633 |
tttattgtgtt |
31654623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 165
Target Start/End: Complemental strand, 8311402 - 8311265
Alignment:
| Q |
37 |
cacgtggttcttcgttttcaacgatctgatggtcaaagt-atgtctagaataagagaaatagtggctgcaatacatacacgaatttgagacttaaa---- |
131 |
Q |
| |
|
|||||||||||| |||||||||| || || |||||| | ||| ||||||| ||||||||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
8311402 |
cacgtggttctttgttttcaacggtccaatcgtcaaaattatgcctagaatgagagaaatagtggctgcaatacaaacatgaatttgagacttaaagctt |
8311303 |
T |
|
| Q |
132 |
----tagtgttaaggaagtaaagctcctaaagtaaggg |
165 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||| |
|
|
| T |
8311302 |
aaagtagtgttaaggaagtaaagctcataaggtaaggg |
8311265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 41 - 254
Target Start/End: Original strand, 24423108 - 24423320
Alignment:
| Q |
41 |
tggttcttcgttttcaacgatctgatggtcaaagt-atgtctagaataagagaaatagtggctgcaatacatacacgaatttgagacttaaatagtgtta |
139 |
Q |
| |
|
||||||||||||||||| | || ||| |||||| | ||||||||||| ||||| | | || ||||||| ||||||||||||||| || |||||||| |
|
|
| T |
24423108 |
tggttcttcgttttcaaaggtccgatcgtcaaaattatgtctagaatgagagagaggacgacttcaatacagacacgaatttgagacata--tagtgtta |
24423205 |
T |
|
| Q |
140 |
aggaagtaaagctcctaaagtaagggccctagtcttggtcatgatttaattgaaaatgatagattatgacgttgaatttaatatgcttcttgattca-tg |
238 |
Q |
| |
|
| || ||||||||||||| |||||| ||||||||||| |||||||||| |||||||||||| |||||| |||||||| |||||||||| ||||| || |
|
|
| T |
24423206 |
aagatgtaaagctcctaaggtaaggaccctagtcttgaccatgatttaactgaaaatgatagtttatgatattgaattttgtatgcttctt-attcattg |
24423304 |
T |
|
| Q |
239 |
gatgagtgaaaagatt |
254 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
24423305 |
gatgagtgaagagatt |
24423320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 154 - 257
Target Start/End: Complemental strand, 9818335 - 9818232
Alignment:
| Q |
154 |
ctaaagtaagggccctagtcttggtcatgatttaattgaaaatgatagattatgacgttgaatttaatatgcttcttga-ttcatggatgagtgaaaaga |
252 |
Q |
| |
|
|||| |||||||| ||||||||| |||| ||||| ||||||||||||||||||| ||||||||| ||||||||||||| || ||||||||||||||||| |
|
|
| T |
9818335 |
ctaaggtaagggctctagtcttgaccatg-tttaaatgaaaatgatagattatgatgttgaatttgatatgcttcttgatttaatggatgagtgaaaaga |
9818237 |
T |
|
| Q |
253 |
tttat |
257 |
Q |
| |
|
||||| |
|
|
| T |
9818236 |
tttat |
9818232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 184 - 263
Target Start/End: Complemental strand, 21231977 - 21231897
Alignment:
| Q |
184 |
tttaattgaaaatgatagattatgacgttgaatttaatatgcttcttga-ttcatggatgagtgaaaagatttattatgtt |
263 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||| ||||||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
21231977 |
tttaaatgaaaatgatagattatgatgttgaatttgatatgcttcttgatttaatggatgagtgaaaagatttattatgtt |
21231897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 184 - 263
Target Start/End: Complemental strand, 42077600 - 42077520
Alignment:
| Q |
184 |
tttaattgaaaatgatagattatgacgttgaatttaatatgcttcttga-ttcatggatgagtgaaaagatttattatgtt |
263 |
Q |
| |
|
||||| ||| ||||||||||||||| ||||||||| ||| ||||||||| || ||||||||||||||||||||||| |||| |
|
|
| T |
42077600 |
tttaaatgagaatgatagattatgatgttgaatttgatacgcttcttgatttaatggatgagtgaaaagatttattgtgtt |
42077520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 159 - 263
Target Start/End: Original strand, 9881089 - 9881194
Alignment:
| Q |
159 |
gtaagggccctagtcttggtcatgatttaattgaaaatgatagattatgacgttgaatttaatatgcttcttgattc-atggatgagtgaaaagatttat |
257 |
Q |
| |
|
|||||||| |||||||| ||||| ||| | ||||||| ||||||||||| || ||||| |||||||| | ||||| ||||||||||||||||||||| |
|
|
| T |
9881089 |
gtaagggctatagtcttgatcatgttttgaatgaaaataatagattatgatcttaaatttgatatgcttatcgattcaatggatgagtgaaaagatttac |
9881188 |
T |
|
| Q |
258 |
tatgtt |
263 |
Q |
| |
|
|||||| |
|
|
| T |
9881189 |
tatgtt |
9881194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 5e-31; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 159 - 263
Target Start/End: Complemental strand, 28497345 - 28497241
Alignment:
| Q |
159 |
gtaagggccctagtcttggtcatgatttaattgaaaatgatagattatgacgttgaatttaatatgcttcttgattcatggatgagtgaaaagatttatt |
258 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||||||||| |||||| |||||||| | ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
28497345 |
gtaagggctctagtcttgaccatgatttaattgaaaatgataggttatgatgttgaattcgacatgcttcttgattcatgaatgagtgaaaagatttatt |
28497246 |
T |
|
| Q |
259 |
atgtt |
263 |
Q |
| |
|
||||| |
|
|
| T |
28497245 |
atgtt |
28497241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 140 - 263
Target Start/End: Complemental strand, 27977322 - 27977199
Alignment:
| Q |
140 |
aggaagtaaagctcctaaagtaagggccctagtcttggtcatgatttaattgaaaatgatagattatgacgttgaatttaatatgcttcttga-ttcatg |
238 |
Q |
| |
|
|||||| ||||| |||| |||||||| |||||||| |||| ||||| ||||||||||||||||||| ||||||||| ||||||||||||| || ||| |
|
|
| T |
27977322 |
aggaaggaaagcgtctaaggtaagggctctagtcttaaccatg-tttaaatgaaaatgatagattatgatgttgaatttgatatgcttcttgatttaatg |
27977224 |
T |
|
| Q |
239 |
gatgagtgaaaagatttattatgtt |
263 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
27977223 |
gatgagtgaaaagatttattatgtt |
27977199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 140 - 263
Target Start/End: Complemental strand, 28063850 - 28063727
Alignment:
| Q |
140 |
aggaagtaaagctcctaaagtaagggccctagtcttggtcatgatttaattgaaaatgatagattatgacgttgaatttaatatgcttcttga-ttcatg |
238 |
Q |
| |
|
|||||| ||||| |||| |||||||| |||||||| |||| ||||| ||||||||||||||||||| ||||||||| ||||||||||||| || ||| |
|
|
| T |
28063850 |
aggaaggaaagcgtctaaggtaagggctctagtcttaaccatg-tttaaatgaaaatgatagattatgatgttgaatttgatatgcttcttgatttaatg |
28063752 |
T |
|
| Q |
239 |
gatgagtgaaaagatttattatgtt |
263 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
28063751 |
gatgagtgaaaagatttattatgtt |
28063727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 159 - 256
Target Start/End: Complemental strand, 16131234 - 16131137
Alignment:
| Q |
159 |
gtaagggccctagtcttggtcatgatttaattgaaaatgatagattatgacgttgaatttaatatgcttcttgattcatggatgagtgaaaagattta |
256 |
Q |
| |
|
|||||||| ||||||||| |||| |||||||||||||||||| |||||| | |||||| | |||||||||||||||| |||||||||||||||||| |
|
|
| T |
16131234 |
gtaagggctctagtcttgaccatggtttaattgaaaatgataggttatgatgctgaattcgacatgcttcttgattcatagatgagtgaaaagattta |
16131137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 159 - 243
Target Start/End: Original strand, 22403749 - 22403834
Alignment:
| Q |
159 |
gtaagggccctagtcttggtcatgatttaattgaaaatgatagattatgacgttgaatttaatatgcttcttgattc-atggatga |
243 |
Q |
| |
|
|||||||| |||||||| |||||||||| ||||||| ||||||||||| ||||||||| |||||||||||||||| |||||||| |
|
|
| T |
22403749 |
gtaagggctctagtctttaccatgatttaactgaaaataatagattatgatgttgaatttgatatgcttcttgattcgatggatga |
22403834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 258
Target Start/End: Complemental strand, 29046689 - 29046614
Alignment:
| Q |
184 |
tttaattgaaaatgatagattatgacgttgaatttaatatgcttcttga-ttcatggatgagtgaaaagatttatt |
258 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||| ||||||| ||||| || |||||||| |||||| ||||||| |
|
|
| T |
29046689 |
tttaaatgaaaatgatagattatgatgttgaatttgatatgctccttgatttaatggatgattgaaaatatttatt |
29046614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 7e-27; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 159 - 263
Target Start/End: Original strand, 13167885 - 13167990
Alignment:
| Q |
159 |
gtaagggccctagtcttggtcatgatttaattgaaaatgatagattatgacgttgaatttaatatgcttcttga-ttcatggatgagtgaaaagatttat |
257 |
Q |
| |
|
|||||||| ||||||||| |||||||||| ||||||||||||||||||| ||||||||| ||||||||||||| || ||||||||| |||||||||||| |
|
|
| T |
13167885 |
gtaagggctctagtcttgaccatgatttaagtgaaaatgatagattatgatgttgaatttgatatgcttcttgatttaatggatgagggaaaagatttat |
13167984 |
T |
|
| Q |
258 |
tatgtt |
263 |
Q |
| |
|
| |||| |
|
|
| T |
13167985 |
tgtgtt |
13167990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 154 - 263
Target Start/End: Original strand, 29587571 - 29587682
Alignment:
| Q |
154 |
ctaaagtaagggccctagtcttggtcatgatttaattgaaaatgatagattatgacgttgaatttaatatgcttcttga-ttcatggatgagtg-aaaag |
251 |
Q |
| |
|
|||| |||||||| ||||||||| |||||||| | ||||||||||||||||||| ||||||||| ||||||||||||| || ||||||||||| ||||| |
|
|
| T |
29587571 |
ctaaggtaagggctctagtcttgaccatgatttgaatgaaaatgatagattatgatgttgaatttgatatgcttcttgatttaatggatgagtgaaaaag |
29587670 |
T |
|
| Q |
252 |
atttattatgtt |
263 |
Q |
| |
|
|||||||||||| |
|
|
| T |
29587671 |
atttattatgtt |
29587682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 159 - 263
Target Start/End: Original strand, 8311732 - 8311837
Alignment:
| Q |
159 |
gtaagggccctagtcttggtcatgatttaattgaaaatgatagattatgacgttgaatttaatatgcttcttgattc-atggatgagtgaaaagatttat |
257 |
Q |
| |
|
||||| || ||||||||| |||||||||| ||||||| ||||||||||| ||||||||| | |||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
8311732 |
gtaagtgctctagtcttgaccatgatttaactgaaaataatagattatgatgttgaatttgacatgcttcttgattcgatggatgggtgaaaagatttat |
8311831 |
T |
|
| Q |
258 |
tatgtt |
263 |
Q |
| |
|
|||||| |
|
|
| T |
8311832 |
tatgtt |
8311837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 154 - 257
Target Start/End: Complemental strand, 10530298 - 10530195
Alignment:
| Q |
154 |
ctaaagtaagggccctagtcttggtcatgatttaattgaaaatgatagattatgacgttgaatttaatatgcttcttga-ttcatggatgagtgaaaaga |
252 |
Q |
| |
|
|||| |||||||| ||||||||| |||| ||||| ||||||||||||||||||| ||||||||| ||||||||||||| || ||||||||||||||||| |
|
|
| T |
10530298 |
ctaaggtaagggctctagtcttgaccatg-tttaaatgaaaatgatagattatgatgttgaatttgatatgcttcttgatttaatggatgagtgaaaaga |
10530200 |
T |
|
| Q |
253 |
tttat |
257 |
Q |
| |
|
||||| |
|
|
| T |
10530199 |
tttat |
10530195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 30 - 254
Target Start/End: Complemental strand, 46003030 - 46002801
Alignment:
| Q |
30 |
ttcataacacgtggttcttcgttttcaacgatctgatggtcaaagt-atgtctagaataagagaaatagtggctgcaatacatacacgaatttgagactt |
128 |
Q |
| |
|
|||| |||| ||||||||||||||||||| || ||| ||||| | ||||||||||| |||||||| |||| | || |||| ||||| |||||| ||| |
|
|
| T |
46003030 |
ttcacaacatgtggttcttcgttttcaacagtccgatcgtcaacatgatgtctagaatgagagaaattgtggttacagtacaaccacgagtttgaggctt |
46002931 |
T |
|
| Q |
129 |
aaa-tagtgttaaggaagtaaagctcctaaa--gtaagggccctagtcttggtcatgatttaattgaaaatgatagattatgacgttgaatttaatatgc |
225 |
Q |
| |
|
||| ||||| |||||||||| ||| ||| ||||| | |||||||| ||||||||||| ||||||| |||| || ||| |||||||| |||||| |
|
|
| T |
46002930 |
aaagtagtgctaaggaagtagagcgtataagaggtaagagttttagtcttgatcatgatttaaatgaaaataataggttgtgatattgaatttgatatgc |
46002831 |
T |
|
| Q |
226 |
ttcttgattc-atggatgagtgaaaagatt |
254 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |
|
|
| T |
46002830 |
ttcttgattcaatggatgagtgaaaagatt |
46002801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 159 - 263
Target Start/End: Original strand, 9745126 - 9745230
Alignment:
| Q |
159 |
gtaagggccctagtcttggtcatgatttaattgaaaatgatagattatgacgttgaatttaatatgcttcttgattc-atggatgagtgaaaagatttat |
257 |
Q |
| |
|
|||||||| ||||||||| |||| ||||| |||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
9745126 |
gtaagggctctagtcttgaccatg-tttaaaggaaaatgatagattatgatgttgaatttgatatgcttcttgattcaatggatgagtgaaaatatttat |
9745224 |
T |
|
| Q |
258 |
tatgtt |
263 |
Q |
| |
|
| |||| |
|
|
| T |
9745225 |
tgtgtt |
9745230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 234
Target Start/End: Original strand, 31211093 - 31211167
Alignment:
| Q |
160 |
taagggccctagtcttggtcatgatttaattgaaaatgatagattatgacgttgaatttaatatgcttcttgatt |
234 |
Q |
| |
|
||||||| ||||||||| ||||||| || ||||||| |||| |||||| || ||||| ||||||||||||||| |
|
|
| T |
31211093 |
taagggctctagtcttgatcatgatctagatgaaaataataggttatgatattaaatttgatatgcttcttgatt |
31211167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 159 - 257
Target Start/End: Complemental strand, 31519251 - 31519152
Alignment:
| Q |
159 |
gtaagggccctagtcttggtcatgatttaattgaaaatgatagattatgacgttgaatttaatatgcttcttgattc-atggatgagtgaaaagatttat |
257 |
Q |
| |
|
|||| ||| ||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||| || || ||||||||||||||||||| |
|
|
| T |
31519251 |
gtaaaggctctagtcttgaccatgatttaattgaaaatgataggttatgacgttgaatttgatatgcttcttgactcaatagatgagtgaaaagatttat |
31519152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 154 - 263
Target Start/End: Original strand, 3295291 - 3295401
Alignment:
| Q |
154 |
ctaaagtaagggccctagtcttggtcatgatttaattgaaaatgatagattatgacgttgaatttaatatgcttcttga-ttcatggatgagtgaaaaga |
252 |
Q |
| |
|
|||| ||||| || ||||||||| |||||||||| ||||| ||||||||||||| ||||||||| ||||||||||||| || ||||||||| ||||||| |
|
|
| T |
3295291 |
ctaaggtaagagctctagtcttgaccatgatttaagtgaaactgatagattatgatgttgaatttgatatgcttcttgatttaatggatgagagaaaaga |
3295390 |
T |
|
| Q |
253 |
tttattatgtt |
263 |
Q |
| |
|
|||||| |||| |
|
|
| T |
3295391 |
tttattgtgtt |
3295401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 184 - 263
Target Start/End: Complemental strand, 41943146 - 41943066
Alignment:
| Q |
184 |
tttaattgaaaatgatagattatgacgttgaatttaatatgcttcttga-ttcatggatgagtgaaaagatttattatgtt |
263 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||| ||||||||||||| || ||||||||||||||||||||||| |||| |
|
|
| T |
41943146 |
tttaaatgaaaatgatagattatgttgttgaatttgatatgcttcttgatttaatggatgagtgaaaagatttattgtgtt |
41943066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0259 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0259
Description:
Target: scaffold0259; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 154 - 263
Target Start/End: Complemental strand, 2661 - 2551
Alignment:
| Q |
154 |
ctaaagtaagggccctagtcttggtcatgatttaattgaaaatgatagattatgacgttgaatttaatatgcttcttga-ttcatggatgagtgaaaaga |
252 |
Q |
| |
|
|||| |||||||| ||||| ||| ||||||||||||||||||||||| |||||| ||||||||| | ||||||||||| || ||||||||||||||||| |
|
|
| T |
2661 |
ctaaggtaagggctctagttttgaccatgatttaattgaaaatgataggttatgatgttgaatttgacatgcttcttgatttaatggatgagtgaaaaga |
2562 |
T |
|
| Q |
253 |
tttattatgtt |
263 |
Q |
| |
|
|||||| |||| |
|
|
| T |
2561 |
tttattgtgtt |
2551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 159 - 263
Target Start/End: Original strand, 2025 - 2129
Alignment:
| Q |
159 |
gtaagggccctagtcttggtcatgatttaattgaaaatgatagattatgacgttgaatttaatatgcttcttga-ttcatggatgagtgaaaagatttat |
257 |
Q |
| |
|
|||||||| ||||||||| ||| |||||| |||||| ||||||||||| ||||||||| ||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
2025 |
gtaagggctctagtcttgaccat-atttaaatgaaaacaatagattatgatgttgaatttgatatgcttcttgatttaatggatgagtgaaaagatttat |
2123 |
T |
|
| Q |
258 |
tatgtt |
263 |
Q |
| |
|
|||||| |
|
|
| T |
2124 |
tatgtt |
2129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 184 - 258
Target Start/End: Original strand, 107882 - 107957
Alignment:
| Q |
184 |
tttaattgaaaatgatagattatgacgttgaatttaatatgcttcttga-ttcatggatgagtgaaaagatttatt |
258 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||| ||||||| ||||| || ||||||||||||||||||||||| |
|
|
| T |
107882 |
tttaaatgaaaatgatagattatgatgttgaatttgatatgctccttgatttaatggatgagtgaaaagatttatt |
107957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 231
Target Start/End: Complemental strand, 18927256 - 18927183
Alignment:
| Q |
158 |
agtaagggccctagtcttggtcatgatttaattgaaaatgatagattatgacgttgaatttaatatgcttcttg |
231 |
Q |
| |
|
||||||||| || |||||| ||| ||||| ||||||| |||| |||||| ||||||||| |||||||||||| |
|
|
| T |
18927256 |
agtaagggctcttgtcttgaccattatttagatgaaaataataggttatgaagttgaatttgatatgcttcttg |
18927183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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