View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1074_low_42 (Length: 257)
Name: NF1074_low_42
Description: NF1074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1074_low_42 |
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Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 8974258 - 8974016
Alignment:
| Q |
1 |
tgtgatagattattttgtgaagtgtttgatataataacagctcctacaactattactgtaagcaaattagaaacttgatcaagaagagttccattcttgt |
100 |
Q |
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| T |
8974258 |
tgtgatagattattttgtgaagtgtttgatataataacagctcctacaactattactgtaagcaaattagaaacttgatcaaaaagagttccattcttgt |
8974159 |
T |
|
| Q |
101 |
cttcacagacaacaatcttacttttcactttgattagttgtgtaatattgtcacacttacccatgaaaacaattggaatattactagcagagaagtttcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8974158 |
cttcacagacaacaatcttacttttcactttgattagttgtgtaatattgtcacacttacccatgaaaacaattggaatattactagcagagaagtttcc |
8974059 |
T |
|
| Q |
201 |
tagataaaaagataagccagagagtgagactccattaccaagt |
243 |
Q |
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| T |
8974058 |
tagataaaaagataagccagagagtgagactccattaccaagt |
8974016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 3 - 243
Target Start/End: Complemental strand, 8962860 - 8962620
Alignment:
| Q |
3 |
tgatagattattttgtgaagtgtttgatataataacagctcctacaactattactgtaagcaaattagaaacttgatcaagaagagttccattcttgtct |
102 |
Q |
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| T |
8962860 |
tgatagatcatcttgtgttgtgtttgatataaaaatagctcctacaacttctgctttaaccacattataaatttgattagaaagactttcattcttgtct |
8962761 |
T |
|
| Q |
103 |
tcacagacaacaatcttacttttcactttgattagttgtgtaatattgtcacacttacccatgaaaacaattggaatattactagcagagaagtttccta |
202 |
Q |
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| T |
8962760 |
tcacaaaccacaatctcgctcttcactctgattagttctgtaaaattgtcacacatacctttgaaaacaatgggaatattactagcagagaagtttccta |
8962661 |
T |
|
| Q |
203 |
gataaaaagataagccagagagtgagactccattaccaagt |
243 |
Q |
| |
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||| |||| ||||| | |||||||||||||||||||||| |
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| T |
8962660 |
tataggaagagaagccggtgagtgagactccattaccaagt |
8962620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 124 - 243
Target Start/End: Original strand, 8946351 - 8946470
Alignment:
| Q |
124 |
ttcactttgattagttgtgtaatattgtcacacttacccatgaaaacaattggaatattactagcagagaagtttcctagataaaaagataagccagaga |
223 |
Q |
| |
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||||||||||||| || ||||| |||||| ||| |||||||||||||||||| | ||| ||||||||||| |||||||||||| ||| | || | || |
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| T |
8946351 |
ttcactttgattaattctgtaacattgtcgcacaaacccatgaaaacaattggcaaattgctagcagagaaatttcctagataattagaccaacctgtga |
8946450 |
T |
|
| Q |
224 |
gtgagactccattaccaagt |
243 |
Q |
| |
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|||||||||||||||||||| |
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| T |
8946451 |
gtgagactccattaccaagt |
8946470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 25 - 243
Target Start/End: Original strand, 21687400 - 21687618
Alignment:
| Q |
25 |
tttgatataataacagctcctacaactattactgtaagcaaattagaaacttgatcaagaagagttccattcttgtcttcacagacaacaatcttacttt |
124 |
Q |
| |
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|||||||||| |||| |||| |||||| || || || || |||| | | ||| ||| |||||||| |||| ||| ||||||| || |||||||| || | |
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| T |
21687400 |
tttgatataaaaacacctccaacaacttttgctttatacacattaaacatttgttcatgaagagtttcattattgccttcacaaaccacaatctttctct |
21687499 |
T |
|
| Q |
125 |
tcactttgattagttgtgtaatattgtcacacttacccatgaaaacaattggaatattactagcagagaagtttcctagataaaaagataagccagagag |
224 |
Q |
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||||| || ||| || | ||| |||||||||| ||||||| ||||||||||||| ||| |||||||||||||||||||||| ||||| || |||| ||| |
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| T |
21687500 |
tcactgtgtttaattctttaacattgtcacacatacccataaaaacaattggaaaattgttagcagagaagtttcctagatagaaagacaaaccagtgag |
21687599 |
T |
|
| Q |
225 |
tgagactccattaccaagt |
243 |
Q |
| |
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||||||||||||||||||| |
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| T |
21687600 |
tgagactccattaccaagt |
21687618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 131
Target Start/End: Original strand, 34963079 - 34963123
Alignment:
| Q |
87 |
agttccattcttgtcttcacagacaacaatcttacttttcacttt |
131 |
Q |
| |
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||||||||||||||||||||| || | |||||| ||||||||||| |
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| T |
34963079 |
agttccattcttgtcttcacacactataatcttgcttttcacttt |
34963123 |
T |
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