View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1074_low_44 (Length: 257)

Name: NF1074_low_44
Description: NF1074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1074_low_44
NF1074_low_44
[»] chr7 (6 HSPs)
chr7 (1-228)||(25090121-25090349)
chr7 (1-79)||(4998443-4998521)
chr7 (29-180)||(19706078-19706231)
chr7 (14-67)||(38570074-38570127)
chr7 (61-153)||(19706246-19706338)
chr7 (4-74)||(19706368-19706438)
[»] chr2 (5 HSPs)
chr2 (3-212)||(11482691-11482901)
chr2 (1-212)||(27640770-27640983)
chr2 (1-227)||(8263374-8263601)
chr2 (1-79)||(17354456-17354534)
chr2 (1-71)||(42473875-42473945)
[»] scaffold0778 (1 HSPs)
scaffold0778 (1-212)||(1168-1382)
[»] chr3 (8 HSPs)
chr3 (48-214)||(25807125-25807294)
chr3 (5-211)||(44521141-44521350)
chr3 (1-85)||(43465918-43466002)
chr3 (106-212)||(25894522-25894630)
chr3 (1-118)||(7441419-7441535)
chr3 (1-97)||(3650601-3650696)
chr3 (1-57)||(25809750-25809806)
chr3 (48-90)||(25893114-25893156)
[»] scaffold1390 (1 HSPs)
scaffold1390 (6-212)||(722-931)
[»] chr1 (9 HSPs)
chr1 (1-208)||(27324721-27324921)
chr1 (1-83)||(43058703-43058785)
chr1 (1-212)||(12882616-12882834)
chr1 (4-76)||(15842236-15842308)
chr1 (78-212)||(43060111-43060250)
chr1 (121-228)||(18113642-18113749)
chr1 (148-228)||(15842124-15842204)
chr1 (25-77)||(18113804-18113856)
chr1 (1-79)||(17879632-17879709)
[»] chr5 (4 HSPs)
chr5 (1-79)||(6228726-6228804)
chr5 (1-79)||(42141258-42141335)
chr5 (1-51)||(18660050-18660100)
chr5 (6-66)||(30062494-30062554)
[»] scaffold0008 (2 HSPs)
scaffold0008 (1-79)||(36113-36191)
scaffold0008 (34-79)||(10617-10662)
[»] chr4 (2 HSPs)
chr4 (1-79)||(43226357-43226434)
chr4 (4-79)||(50376065-50376139)
[»] chr8 (6 HSPs)
chr8 (112-212)||(25269919-25270019)
chr8 (129-212)||(36257516-36257599)
chr8 (1-67)||(35416615-35416681)
chr8 (14-67)||(33180319-33180372)
chr8 (89-155)||(17032804-17032869)
chr8 (89-155)||(17563240-17563305)
[»] scaffold2061 (1 HSPs)
scaffold2061 (4-74)||(355-425)


Alignment Details
Target: chr7 (Bit Score: 173; Significance: 4e-93; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 25090349 - 25090121
Alignment:
Q  1 tataatacaactgttaattggagaaattttcagttgacaagaaaatataaaggagatttgaaaccccaaaaaattagaatgtatgcagacctccgctgcc 100  Q
    |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| || ||    
T  25090349 tataatacaactattaatttgagaaattttcagttgacaagaaaatataaaggagatttgaaaccccaaaaaattagaatgtctgtagacctccactacc 25090250  T
Q  101 caac-aagtataagcatgacgaaaatcacatgtcatttttagaaccgtcgaaaacccaaaccgatgaaaaatggtttaaaaaatcgtagaataaacctat 199  Q
    |||| |||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||| |||||||||||||||||| ||||| |||||||||||    
T  25090249 caaccaagtataagcatgacgaaaatcacatgtcacttttaaaaccgtcgaaaatccaaaccgttgaaaaatggtttaaaaactcgtaaaataaacctat 25090150  T
Q  200 gatttttaattttctaggtgggccactac 228  Q
    |||||||||||||||||||||||||||||    
T  25090149 gatttttaattttctaggtgggccactac 25090121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 4998521 - 4998443
Alignment:
Q  1 tataatacaactgttaattggagaaattttcagttgacaagaaaatataaaggagatttgaaaccccaaaaaattagaa 79  Q
    |||||||||||| ||||||||   |||||||||||||||||| ||||||||  |||||||||||||| |||||||||||    
T  4998521 tataatacaactcttaattgggagaattttcagttgacaagacaatataaaaaagatttgaaaccccgaaaaattagaa 4998443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 29 - 180
Target Start/End: Complemental strand, 19706231 - 19706078
Alignment:
Q  29 ttcagttgacaagaaaatataaaggagatttgaaaccccaaaaaattagaatgtatgcagacctccgctgcccaac-aagtataagcatgacgaaa-atc 126  Q
    |||| ||||| ||| ||||| || ||||||||||||||||||||| || || ||||| | |||||| ||  ||||| ||||||||| ||||  ||| | |    
T  19706231 ttcatttgaccagacaatatcaaagagatttgaaaccccaaaaaaatataaggtatgtaaacctccactaaccaaccaagtataagaatgaaaaaataac 19706132  T
Q  127 acatgtcatttttagaaccgtcgaaaacccaaaccgatgaaaaatggtttaaaa 180  Q
    | ||||||||||| ||||||||||||||| |||| | |||||||| ||||||||    
T  19706131 atatgtcatttttggaaccgtcgaaaacctaaactgttgaaaaattgtttaaaa 19706078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 38570074 - 38570127
Alignment:
Q  14 ttaattggagaaattttcagttgacaagaaaatataaaggagatttgaaacccc 67  Q
    ||||||| ||| ||||| ||||||||||| |||||||||||| |||||||||||    
T  38570074 ttaattgaagagatttttagttgacaagacaatataaaggaggtttgaaacccc 38570127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 153
Target Start/End: Complemental strand, 19706338 - 19706246
Alignment:
Q  61 aaaccccaaaaaattagaatgtatgcagacctccgctgcccaacaagtataagcatgacgaaaatcacatgtcatttttagaaccgtcgaaaa 153  Q
    |||||| |||||| ||||| ||||| | ||||||| |  ||| | |||||||||||||  |||||||||||||| |||| |||||| ||||||    
T  19706338 aaacccaaaaaaaatagaaggtatgtaaacctccgataaccagccagtataagcatgaaaaaaatcacatgtcacttttggaaccgccgaaaa 19706246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 74
Target Start/End: Complemental strand, 19706438 - 19706368
Alignment:
Q  4 aatacaactgttaattggagaaattttcagttgacaagaaaatataaaggagatttgaaaccccaaaaaat 74  Q
    ||||||||| ||| |||| | |||||||| ||||| ||| ||||| || |||||||||||||| |||||||    
T  19706438 aatacaactcttagttgggggaattttcatttgaccagacaatatcaaagagatttgaaacccaaaaaaat 19706368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 119; Significance: 7e-61; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 3 - 212
Target Start/End: Original strand, 11482691 - 11482901
Alignment:
Q  3 taatacaactgttaattggagaaattttcagttgacaagaaaatataaaggagatttgaaaccccaaaaaattagaatgtatgcagacctccgctgccca 102  Q
    |||||||||||||||||| || |||||||| ||||||||| |||||||||||||||||||| ||| ||||||||||| ||||| | ||||||||| || |    
T  11482691 taatacaactgttaattgaaggaattttcaattgacaagacaatataaaggagatttgaaaacccgaaaaattagaaggtatgtaaacctccgctaccaa 11482790  T
Q  103 a-caagtataagcatgacgaaaatcacatgtcatttttagaaccgtcgaaaacccaaaccgatgaaaaatggtttaaaaaatcgtagaataaacctatga 201  Q
    | |||||||||||||||| |||||||||||| | |||||||||||||||||||| |||||  |||||||| ||||||||| ||||| ||||||||||| |    
T  11482791 aacaagtataagcatgacaaaaatcacatgttacttttagaaccgtcgaaaacctaaaccattgaaaaattgtttaaaaactcgtaaaataaacctataa 11482890  T
Q  202 tttttaatttt 212  Q
    |||||||||||    
T  11482891 tttttaatttt 11482901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 27640983 - 27640770
Alignment:
Q  1 tataatacaactgttaattggagaaattttcagttgacaagaaaatataaa-ggagatttgaaaccccaaaaaattagaatgtatgcagacctccgctgc 99  Q
    |||||||||||| |||||||||| |||||||| ||||||||| |||||||| ||| ||||||||||||| ||||||||||  |||| | ||||| |||||    
T  27640983 tataatacaactattaattggaggaattttcaattgacaagacaatataaaaggatatttgaaaccccagaaaattagaagatatgtaaacctctgctgc 27640884  T
Q  100 ccaac-aagtataagcatgacgaaaatcacatgtcatttttagaaccgtcgaaaacccaaaccgatgaaaaatggtttaaaaaatcgtagaataaaccta 198  Q
    ||||| ||||||||||||||| |||||||||||||| ||||||||||| | ||||| ||||||  |||||||| ||||||||| ||||| |||| |||||    
T  27640883 ccaaccaagtataagcatgacaaaaatcacatgtcacttttagaaccgccaaaaactcaaaccattgaaaaattgtttaaaaactcgtaaaatagaccta 27640784  T
Q  199 tgatttttaatttt 212  Q
    ||||||||||||||    
T  27640783 tgatttttaatttt 27640770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 8263601 - 8263374
Alignment:
Q  1 tataatacaactgttaattggagaaattttcagttgacaagaaaatataaaggagatttgaaaccccaaaaaattagaatgtatgcagacctccgctgcc 100  Q
    ||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| || || || | || | |||| ||    
T  8263601 tataatagaattgttaattggagaaattttcagttgacaagacaatataaaggagatttgaaactccaaaaaattataaggtttgtaaactttcgctacc 8263502  T
Q  101 caa-caagtataagcatgacgaaaatcacatgtcatttttagaaccgtcgaaaacccaaaccgatgaaaaatggtttaaaaaatcgtagaataaacctat 199  Q
    ||| ||||| |||||||||| |||||||||||||| ||||| ||  | |||||||||||| || |||||||| ||||| ||| ||||| ||||  |||||    
T  8263501 caaccaagtgtaagcatgacaaaaatcacatgtcacttttaaaattgccgaaaacccaaatcgttgaaaaattgtttagaaactcgtaaaataggcctat 8263402  T
Q  200 gatttttaattttctaggtgggccacta 227  Q
    |||||| ||||||  |||||||||||||    
T  8263401 gattttaaattttacaggtgggccacta 8263374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 17354456 - 17354534
Alignment:
Q  1 tataatacaactgttaattggagaaattttcagttgacaagaaaatataaaggagatttgaaaccccaaaaaattagaa 79  Q
    |||||||||||| ||||||||   |||||||||||||||||| |||||||| ||||||||||||||| |||||||||||    
T  17354456 tataatacaactcttaattgggagaattttcagttgacaagacaatataaaagagatttgaaacccccaaaaattagaa 17354534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 42473945 - 42473875
Alignment:
Q  1 tataatacaactgttaattggagaaattttcagttgacaagaaaatataaaggagatttgaaaccccaaaa 71  Q
    |||||||||||| |||||| | |||||||||| ||||||| |  ||||||| |||||||||||| ||||||    
T  42473945 tataatacaactcttaatttgggaaattttcaattgacaatattatataaaagagatttgaaactccaaaa 42473875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0778 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0778
Description:

Target: scaffold0778; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 1168 - 1382
Alignment:
Q  1 tataatacaactgttaattggagaaattttcagttgacaagaaaatataaaggagatttgaaaccccaaaaaattagaatgtatgcagacctccgctgcc 100  Q
    |||| ||||||| |||| ||||| |||||||| |||||| || | |||||||||||||||||||||||| ||||||||| |||||||||| |||||| ||    
T  1168 tatagtacaactcttaagtggaggaattttcaattgacaggatagtataaaggagatttgaaaccccaataaattagaaagtatgcagacatccgctacc 1267  T
Q  101 caa-caagtataagcatgacgaaaatcac--atgtcatttttagaaccgtcgaaaacccaaaccgatgaaaaatggtttaaaaaatcgtagaataaacct 197  Q
    ||| |||||||||||||||  || |||||  |||||| |||||||||   |||||||| |||||| ||||||||  |||||||| ||||| |||| ||||    
T  1268 caaccaagtataagcatgataaatatcacatatgtcacttttagaacaaccgaaaacctaaaccgttgaaaaattatttaaaaactcgtaaaatagacct 1367  T
Q  198 atgatttttaatttt 212  Q
    ||||||| |||||||    
T  1368 atgatttataatttt 1382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 48 - 214
Target Start/End: Complemental strand, 25807294 - 25807125
Alignment:
Q  48 taaaggagatttgaaaccccaaaaaattagaatgtatgcagacctccgctgcccaac-aagtataagcatgacgaaaatcacat--gtcatttttagaac 144  Q
    |||| |||||||||||| ||||||||||| || ||||| | ||||||||| |||||| || |||||||||||| ||||||||||  |||| |||||||||    
T  25807294 taaatgagatttgaaacaccaaaaaattaaaaggtatgtaaacctccgctacccaaccaaatataagcatgacaaaaatcacatatgtcacttttagaac 25807195  T
Q  145 cgtcgaaaacccaaaccgatgaaaaatggtttaaaaaatcgtagaataaacctatgatttttaattttct 214  Q
    || ||||||||||||||  |||||||| ||||||||| ||||| |||| |||||| ||| | ||||||||    
T  25807194 cgccgaaaacccaaaccattgaaaaattgtttaaaaactcgtaaaatagacctataattataaattttct 25807125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 5 - 211
Target Start/End: Original strand, 44521141 - 44521350
Alignment:
Q  5 atacaactgttaattggagaaattttcagttgacaagaaaatataaaggagatttgaaaccccaaaaaattagaatgtatgcagacctccgctgcccaa- 103  Q
    |||||| |||||||| ||| ||||||||| |||||||| |||||| || ||||||||||||| | |||||||||| |  || | ||||||||| |||||     
T  44521141 atacaattgttaattagaggaattttcagctgacaagataatatatagaagatttgaaaccctacaaaattagaa-gcctgtaaacctccgctacccaac 44521239  T
Q  104 caagtataagcat-gacgaaaatcac--atgtcatttttagaaccgtcgaaaacccaaaccgatgaaaaatggtttaaaaaatcgtagaataaacctatg 200  Q
    ||| |||| |||| |   ||||||||  |||||| ||||||||||| |||||||| |||||  | |||||| ||||||||| ||||| |||||| || ||    
T  44521240 caaatataggcatggtaaaaaatcacatatgtcacttttagaaccgccgaaaacctaaaccattaaaaaattgtttaaaaactcgtaaaataaatctgtg 44521339  T
Q  201 atttttaattt 211  Q
    |||||||||||    
T  44521340 atttttaattt 44521350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 43466002 - 43465918
Alignment:
Q  1 tataatacaactgttaattggagaaattttcagttgacaagaaaatataaaggagatttgaaaccccaaaaaattagaatgtatg 85  Q
    |||||||||||| |||||||||| |||||||| ||||||||| ||||| || ||||||||||||||||||||| ||||| |||||    
T  43466002 tataatacaactcttaattggaggaattttcatttgacaagacaatatcaaagagatttgaaaccccaaaaaaatagaaggtatg 43465918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 106 - 212
Target Start/End: Original strand, 25894522 - 25894630
Alignment:
Q  106 agtataagcatgacgaaaatcacatgt--catttttagaaccgtcgaaaacccaaaccgatgaaaaatggtttaaaaaatcgtagaataaacctatgatt 203  Q
    |||||||||||||  |||||||||| |  || ||||||||||  ||||||||||||||| ||||||||  |||||||  ||||| |||| ||||||||||    
T  25894522 agtataagcatgataaaaatcacatatatcacttttagaaccaccgaaaacccaaaccgttgaaaaattatttaaaacctcgtaaaatagacctatgatt 25894621  T
Q  204 tttaatttt 212  Q
    ||| |||||    
T  25894622 ttttatttt 25894630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 7441419 - 7441535
Alignment:
Q  1 tataatacaactgttaattggagaaattttcagttgacaagaaaatataaaggagatttgaaaccccaaaaaattagaatgtatgcagacctccgctgcc 100  Q
    |||||||||||| ||||||||   ||||||||||| ||| || |||||||  ||||||||||||||| |||||| |||| || || | |||||||||  |    
T  7441419 tataatacaactcttaattgggagaattttcagttcacaggacaatataa--gagatttgaaacccccaaaaatcagaaggtttggaaacctccgctaac 7441516  T
Q  101 ca-acaagtataagcatga 118  Q
    ||  |||||||||||||||    
T  7441517 cagccaagtataagcatga 7441535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 3650696 - 3650601
Alignment:
Q  1 tataatacaactgttaattggagaaattttcagttgacaagaaaatataaaggagatttgaaaccccaaaaaattagaatgtatgcagacctccgct 97  Q
    |||||||||| |||||||||||  |||||| ||||||||| | ||||| | |||| ||||||||||| | ||||||||| || || | |||||||||    
T  3650696 tataatacaaatgttaattggaacaatttttagttgacaa-acaatatgagggaggtttgaaacccccagaaattagaaggtttgtaaacctccgct 3650601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 25809806 - 25809750
Alignment:
Q  1 tataatacaactgttaattggagaaattttcagttgacaagaaaatataaaggagat 57  Q
    ||||||||||||||||||||||  |||||| ||||||||||| ||| |||| |||||    
T  25809806 tataatacaactgttaattggatgaatttttagttgacaagacaatgtaaatgagat 25809750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 90
Target Start/End: Original strand, 25893114 - 25893156
Alignment:
Q  48 taaaggagatttgaaaccccaaaaaattagaatgtatgcagac 90  Q
    ||||||||||||||||||||| |||||||||| ||||| ||||    
T  25893114 taaaggagatttgaaaccccacaaaattagaaagtatgtagac 25893156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1390 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold1390
Description:

Target: scaffold1390; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 6 - 212
Target Start/End: Complemental strand, 931 - 722
Alignment:
Q  6 tacaactgttaattggagaaattttcagttgacaagaaaatataaaggagatttgaaaccccaaaaaattagaatgtatgcagacctccgctgcccaac- 104  Q
    ||||||| |||| ||||| |||||||| |||||| || | |||||||||||||||||||||||| |||||| || ||||| | || |||||| ||||||     
T  931 tacaactcttaagtggaggaattttcaattgacaggatagtataaaggagatttgaaaccccaataaattataaagtatgtaaacatccgctacccaacg 832  T
Q  105 aagtataagcatgacgaaaatcac--atgtcatttttagaaccgtcgaaaacccaaaccgatgaaaaatggtttaaaaaatcgtagaataaacctatgat 202  Q
    || |||||||||||  ||||||||  |||||| |||||||||   |||||||| |||| | ||||||||  |||||||| ||||| |||| |||||| ||    
T  831 aaatataagcatgataaaaatcacatatgtcacttttagaacaaccgaaaacctaaactgttgaaaaattatttaaaaactcgtaaaatacacctattat 732  T
Q  203 ttttaatttt 212  Q
    ||| ||||||    
T  731 tttcaatttt 722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 27324921 - 27324721
Alignment:
Q  1 tataatacaactgttaattggagaaattttcagttgacaagaaaatataaaggagatttgaaaccccaaaaaattagaatgtatgcagacctccgctgcc 100  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||         ||||||||||||||| |||||| |  || | |||| | ||  |    
T  27324921 tataatacaactgttaattggagcaattttcagttgacaagataatat---------ttgaaaccccaaaaa-ttagaaggcttgtaaaccttcactatc 27324832  T
Q  101 caac-aagtataagcatgacgaaaatcacat--gtcatttttagaaccgtcgaaaacccaaaccgatgaaaaatggtttaaaaaatcgtagaataaacct 197  Q
    |||| ||| | ||||||||| ||||||||||  |||||||||||||||| |||||| |||||||| |||||||| ||||||||| ||||| || | ||||    
T  27324831 caaccaagaaaaagcatgacaaaaatcacatatgtcatttttagaaccgccgaaaatccaaaccgttgaaaaattgtttaaaaactcgtaaaacagacct 27324732  T
Q  198 atgatttttaa 208  Q
    ||| |||||||    
T  27324731 atggtttttaa 27324721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 43058703 - 43058785
Alignment:
Q  1 tataatacaactgttaattggagaaattttcagttgacaagaaaatataaaggagatttgaaaccccaaaaaattagaatgta 83  Q
    ||||||||||||||||||| ||| ||||||||| |||||||| |||||||||||||||||||||||||||| |||| ||||||    
T  43058703 tataatacaactgttaatttgaggaattttcagatgacaagacaatataaaggagatttgaaaccccaaaacattaaaatgta 43058785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 12882616 - 12882834
Alignment:
Q  1 tataatacaactgttaattggagaaattttcagttgacaaga-aaatataaaggagatttgaaaccccaaaaaattagaatgtatgcagacctccgctgc 99  Q
    |||||||||||| |||||||| ||| |||||||||||||||| ||||||||| || |||||||||||||||||||||||| || |  | | || ||||      
T  12882616 tataatacaactcttaattggggaa-ttttcagttgacaagacaaatataaaagatatttgaaaccccaaaaaattagaaggtcttgaaagcttcgctaa 12882714  T
Q  100 ccaa-caagtataagcatgacgaa-aatcac--atgtcatttttagaaccgtcgaaaacccaa---accgatgaaaaatggtttaaaaaatcgtagaata 192  Q
    |||| |||||||||||||||  || ||||||  |||||| ||||||||||| |||||||| ||   || | |||||||| ||||||||  ||| | ||||    
T  12882715 ccaaccaagtataagcatgaaaaataatcacatatgtcacttttagaaccgccgaaaacctaaaatactgttgaaaaattgtttaaaacctcgcaaaata 12882814  T
Q  193 aacctatgatttttaatttt 212  Q
      ||||||| ||||||||||    
T  12882815 gtcctatgaattttaatttt 12882834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 76
Target Start/End: Complemental strand, 15842308 - 15842236
Alignment:
Q  4 aatacaactgttaattggagaaattttcagttgacaagaaaatataaaggagatttgaaaccccaaaaaatta 76  Q
    |||||||||||| ||||| | ||||||||||||||||||  |||||||| |||||||||||||||||||||||    
T  15842308 aatacaactgttgattggtggaattttcagttgacaagactatataaagaagatttgaaaccccaaaaaatta 15842236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 78 - 212
Target Start/End: Original strand, 43060111 - 43060250
Alignment:
Q  78 aatgtatgcagacctccgctgcccaac-aagtataagcatgacgaaaatcacatgt---catttt-tagaaccgtcgaaaacccaaaccgatgaaaaatg 172  Q
    |||||||| | ||||||||| |||||| ||||||||||||||| |||||||||| |   |||||| ||||||||  |||||||||||||| ||||||||     
T  43060111 aatgtatgtaaacctccgctacccaaccaagtataagcatgacaaaaatcacatatgtccattttatagaaccgctgaaaacccaaaccgttgaaaaatt 43060210  T
Q  173 gtttaaaaaatcgtagaataaacctatgatttttaatttt 212  Q
    ||||||||   |||| |||  ||||||||| |||||||||    
T  43060211 gtttaaaaccccgtaaaattgacctatgatatttaatttt 43060250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 121 - 228
Target Start/End: Complemental strand, 18113749 - 18113642
Alignment:
Q  121 aaaatcacatgtcatttttagaaccgtcgaaaacccaaaccgatgaaaaatggtttaaaaaatcgtagaataaacctatgatttttaattttctaggtgg 220  Q
    |||||||||||||  |||| |||||| ||||||| ||||||  |||||||| ||||||||  ||| | |||| |||||||||||||||||||  ||||||    
T  18113749 aaaatcacatgtcgcttttggaaccgccgaaaactcaaaccattgaaaaattgtttaaaacctcgcaaaatagacctatgatttttaatttttgaggtgg 18113650  T
Q  221 gccactac 228  Q
    | ||||||    
T  18113649 gtcactac 18113642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 148 - 228
Target Start/End: Complemental strand, 15842204 - 15842124
Alignment:
Q  148 cgaaaacccaaaccgatgaaaaatggtttaaaaaatcgtagaataaacctatgatttttaattttctaggtgggccactac 228  Q
    ||||||||||||| | |||||| | ||||||| ||| ||| |||| |||||| |||||||||||| ||| |||||||||||    
T  15842204 cgaaaacccaaactgttgaaaatttgtttaaataattgtaaaatagacctataatttttaattttttagatgggccactac 15842124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 18113856 - 18113804
Alignment:
Q  25 aattttcagttgacaagaaaatataaaggagatttgaaaccccaaaaaattag 77  Q
    |||||||||||||||||| |||||||| |||||||||||||||  ||||||||    
T  18113856 aattttcagttgacaagacaatataaatgagatttgaaaccccccaaaattag 18113804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 17879632 - 17879709
Alignment:
Q  1 tataatacaactgttaattggagaaattttcagttgacaagaaaatataaaggagatttgaaaccccaaaaaattagaa 79  Q
    |||||||||| |||||||||||  ||||||| |||||||| | ||||||| |||| |||||||| || | |||||||||    
T  17879632 tataatacaaatgttaattggaataattttcggttgacaa-acaatataagggaggtttgaaactcctacaaattagaa 17879709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 6228726 - 6228804
Alignment:
Q  1 tataatacaactgttaattggagaaattttcagttgacaagaaaatataaaggagatttgaaaccccaaaaaattagaa 79  Q
    |||||||||||| |||||||| | |||||||||||||||||| |||||||| ||| ||||||||||| |||||||||||    
T  6228726 tataatacaactcttaattgggggaattttcagttgacaagataatataaacgaggtttgaaacccccaaaaattagaa 6228804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 42141335 - 42141258
Alignment:
Q  1 tataatacaactgttaattggagaaattttcagttgacaagaaaatataaaggagatttgaaaccccaaaaaattagaa 79  Q
    |||||||||| |||||||||||  |||||||||||| ||| | ||||||| |||| ||||||||||| | |||||||||    
T  42141335 tataatacaaatgttaattggaacaattttcagttgccaa-acaatataagggaggtttgaaacccccacaaattagaa 42141258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 18660100 - 18660050
Alignment:
Q  1 tataatacaactgttaattggagaaattttcagttgacaagaaaatataaa 51  Q
    ||||| |||| |||||||||| | |||||||||||||||||| ||||||||    
T  18660100 tataacacaattgttaattgggggaattttcagttgacaagacaatataaa 18660050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 30062494 - 30062554
Alignment:
Q  6 tacaactgttaattggagaaattttcagttgacaagaaaatataaaggagatttgaaaccc 66  Q
    ||||| ||||||||| |  ||||||||||||||| || ||||||  |||||||||||||||    
T  30062494 tacaattgttaattgaaagaattttcagttgacatgacaatatacgggagatttgaaaccc 30062554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 36191 - 36113
Alignment:
Q  1 tataatacaactgttaattggagaaattttcagttgacaagaaaatataaaggagatttgaaaccccaaaaaattagaa 79  Q
    |||||||||||| ||||||||   |||||||| ||||||||| |||||||| ||||||||||||||| ||| |||||||    
T  36191 tataatacaactcttaattgggagaattttcaattgacaagacaatataaaagagatttgaaacccccaaagattagaa 36113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 79
Target Start/End: Complemental strand, 10662 - 10617
Alignment:
Q  34 ttgacaagaaaatataaaggagatttgaaaccccaaaaaattagaa 79  Q
    ||||||||| |||||||| ||||||||||| ||| |||||||||||    
T  10662 ttgacaagacaatataaaagagatttgaaatccccaaaaattagaa 10617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 43226434 - 43226357
Alignment:
Q  1 tataatacaactgttaattggagaaattttcagttgacaagaaaatataaaggagatttgaaaccccaaaaaattagaa 79  Q
    |||||||||||| ||||||||||||||||||| ||||  ||| |||||||| ||||||||||||||| |||||| ||||    
T  43226434 tataatacaactcttaattggagaaattttcaattga-tagacaatataaaagagatttgaaacccccaaaaatcagaa 43226357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 79
Target Start/End: Original strand, 50376065 - 50376139
Alignment:
Q  4 aatacaactgttaattggagaaattttcagttgacaagaaaatataaaggagatttgaaaccccaaaaaattagaa 79  Q
    ||||||| |||||||||||  |||||||||||||||| | ||||||| |||| |||||||| || | |||||||||    
T  50376065 aatacaaatgttaattggaacaattttcagttgacaa-acaatataagggaggtttgaaactcccacaaattagaa 50376139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 212
Target Start/End: Complemental strand, 25270019 - 25269919
Alignment:
Q  112 agcatgacgaaaatcacatgtcatttttagaaccgtcgaaaacccaaaccgatgaaaaatggtttaaaaaatcgtagaataaacctatgatttttaattt 211  Q
    |||||||| |||||||||||||| ||||||||||  |||||| |||||| | |||||| | ||||||||| ||||| |||  |||||  |||||||||||    
T  25270019 agcatgacaaaaatcacatgtcacttttagaaccaccgaaaatccaaactgctgaaaatttgtttaaaaactcgtaaaattgacctacaatttttaattt 25269920  T
Q  212 t 212  Q
    |    
T  25269919 t 25269919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 212
Target Start/End: Original strand, 36257516 - 36257599
Alignment:
Q  129 atgtcatttttagaaccgtcgaaaacccaaaccgatgaaaaatggtttaaaaaatcgtagaataaacctatgatttttaatttt 212  Q
    |||||||||||||||| |||||||||  |||| | |||||||| ||||||||| ||| | |||  ||| |||||||||||||||    
T  36257516 atgtcatttttagaactgtcgaaaactaaaactgttgaaaaattgtttaaaaactcgcaaaatggaccaatgatttttaatttt 36257599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 35416681 - 35416615
Alignment:
Q  1 tataatacaactgttaattggagaaattttcagttgacaagaaaatataaaggagatttgaaacccc 67  Q
    |||| |||||||||||||||||| |||||| | | |||| || ||||||| |||| |||||||||||    
T  35416681 tatagtacaactgttaattggaggaattttaactcgacatgacaatataagggaggtttgaaacccc 35416615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 33180319 - 33180372
Alignment:
Q  14 ttaattggagaaattttcagttgacaagaaaatataaaggagatttgaaacccc 67  Q
    ||||||| || ||||||||||||||| || |||||||||||| ||| |||||||    
T  33180319 ttaattgaaggaattttcagttgacatgataatataaaggaggtttaaaacccc 33180372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 155
Target Start/End: Original strand, 17032804 - 17032869
Alignment:
Q  89 acctccgctgcccaac-aagtataagcatgacgaaaatcacatgtcatttttagaaccgtcgaaaacc 155  Q
    ||||||||| |||||| |||||||| | |||| |||||||||||  ||||||||||||||| ||||||    
T  17032804 acctccgctacccaaccaagtataaacctgacaaaaatcacatg--atttttagaaccgtcaaaaacc 17032869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 155
Target Start/End: Original strand, 17563240 - 17563305
Alignment:
Q  89 acctccgctgcccaac-aagtataagcatgacgaaaatcacatgtcatttttagaaccgtcgaaaacc 155  Q
    ||||||||| |||||| |||||||| | |||| |||||||||||  ||||||||||||||| ||||||    
T  17563240 acctccgctacccaaccaagtataaacctgacaaaaatcacatg--atttttagaaccgtcaaaaacc 17563305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2061 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold2061
Description:

Target: scaffold2061; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 74
Target Start/End: Complemental strand, 425 - 355
Alignment:
Q  4 aatacaactgttaattggagaaattttcagttgacaagaaaatataaaggagatttgaaaccccaaaaaat 74  Q
    ||||||||| |||||||| | |||||||| ||||| ||| ||||| || |||||||||||||| |||||||    
T  425 aatacaactcttaattgggggaattttcatttgaccagacaatatcaaagagatttgaaacccaaaaaaat 355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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