View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1074_low_49 (Length: 243)
Name: NF1074_low_49
Description: NF1074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1074_low_49 |
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Alignment Details
Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 31192775 - 31192623
Alignment:
| Q |
1 |
attgatataaacctcattgcagaaactatttcttaaaaaccatatagcacagtggatataatgttattttctggaaggatattgcatagtccctacaaaa |
100 |
Q |
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| T |
31192775 |
attgatataaacctcattgcagaaactatttcttaaaaaccatatagcacagtggatataatgttattttctggaaggatattgcatagtccctacaaaa |
31192676 |
T |
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| Q |
101 |
gataattcaagcacagaaatttgaccctcttttgctcttttgttgtgcctatg |
153 |
Q |
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| T |
31192675 |
gataattcaagcacagaaatttgaccctcttttgctcttttgttgtgcctatg |
31192623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 31014521 - 31014370
Alignment:
| Q |
1 |
attgatataaacctcattgcagaaactatttcttaaaaaccatatagcacagtggatataatgttattttctggaaggatattgcatagtccctacaaaa |
100 |
Q |
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|||||||||||| || |||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |
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| T |
31014521 |
attgatataaactacactgcagaaactatttcttaaatac-atatagcacagtggatataatgttattttcttgaaggatatgtcatagtccctacaaaa |
31014423 |
T |
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| Q |
101 |
gataattcaagcacagaaatttgaccctcttttgctcttttgttgtgcctatg |
153 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31014422 |
gataattcaagcacagaaatttgaccctcttttgctcttttgttgtgcctatg |
31014370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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