View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1074_low_5 (Length: 622)
Name: NF1074_low_5
Description: NF1074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1074_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 11 - 262
Target Start/End: Complemental strand, 28367584 - 28367337
Alignment:
| Q |
11 |
tatgaagacgaactcaagaagaaaattgcatgcttgatatcatttgtgaagcttttgtgtagcttgcttctta---ctcaataataagatatctattatt |
107 |
Q |
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| T |
28367584 |
tatgaagacgaactcaagaagaaaattgcatgcttgatatcatttgtgaagcttttgtgtagcttgcttcttagctctcaataataagatatctattatt |
28367485 |
T |
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| Q |
108 |
tggatcaatataatcaagctacataaatagaatttacaattgattatatgtgcatttgacataggcccctggtgtgcaatgcatctaacaggacaatttt |
207 |
Q |
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| T |
28367484 |
tggatcaatataatcaagctacataaatagaatttacaattgattatatgtgcatttgacataggcccctggtgtgcaatgcatctaacaggacaatttt |
28367385 |
T |
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| Q |
208 |
ttccataaatttccaagctttggcctttgggtgtcaaattgttgatcatactagt |
262 |
Q |
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| T |
28367384 |
ttccataaattcccaagct-------ttgggtgtcaaattgtcgatcatactagt |
28367337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 420 - 593
Target Start/End: Complemental strand, 28367118 - 28366945
Alignment:
| Q |
420 |
aagtagtctgtagtcttcttgccctgctatgaaatttttgttttattctgcaaaatggattggcttctttgacatattttggaggttcttctttaagctt |
519 |
Q |
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| T |
28367118 |
aagtagtgtgtagtcttcttgccctgctatgaaatttttgttttattctgcaaaatggattggcttctttgacatattttggaggttcttctttaagctt |
28367019 |
T |
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| Q |
520 |
tcatatattttaatgaatgtgtgtatatagactgaggttcgtgtggagactttcagggatcaacatgttggttt |
593 |
Q |
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| T |
28367018 |
tcatatattttaatgaatgtgtgtatatagactgaggttcgtgtggagactttcagggatcaacatgttggttt |
28366945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 261 - 420
Target Start/End: Complemental strand, 28367306 - 28367147
Alignment:
| Q |
261 |
gttaaagatatttggatctgaagcacgattcaaaacattaggactgtatttatttttcttagaatttataatgactttacaatttacatatcattacttg |
360 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28367306 |
gttaaagatatttggatctaaagcacgattcaaaacattaggactgtattcatttttcttagaatttataatgactttacaatttacatatcattacttg |
28367207 |
T |
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| Q |
361 |
tgtaatattttacatatcatcccctttttcttgaatttagggatgctagaacttagaaga |
420 |
Q |
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| T |
28367206 |
tgtaatattttacatatcatcccctttttcttgaatttagggatgctagaacttagaaga |
28367147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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