View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1074_low_53 (Length: 220)
Name: NF1074_low_53
Description: NF1074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1074_low_53 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 111 - 220
Target Start/End: Original strand, 39793435 - 39793544
Alignment:
| Q |
111 |
ccctgcaacaggtttgtttctacttcccnnnnnnnggggactgagcacaacaaaagataccatcatacgaagtggtaggttgccaagaaaaccctacgat |
210 |
Q |
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| T |
39793435 |
ccctgcaacaggtttgtttctactttccacaaaaatgggactgagcacaactaaagataccatcatacgaagtggtaggttgccaagaaaaacctacaat |
39793534 |
T |
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| Q |
211 |
taccgccgct |
220 |
Q |
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|||||||||| |
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| T |
39793535 |
taccgccgct |
39793544 |
T |
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