View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1074_low_7 (Length: 613)
Name: NF1074_low_7
Description: NF1074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1074_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 164; Significance: 2e-87; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 203 - 366
Target Start/End: Complemental strand, 3452651 - 3452488
Alignment:
| Q |
203 |
aggcggaggagaagatgaagaaggagtaatgatggctggtgatttcttttggtcatataccgatgaacctcatgcttctcgccgtcgtcagatcctctcc |
302 |
Q |
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| T |
3452651 |
aggcggaggagaagatgaagaaggagtaatgatggctggtgatttcttttggtcatataccgatgaacctcatgcttctcgccgtcgtcagatcctctcc |
3452552 |
T |
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| Q |
303 |
aaataccctcatattaaacaactctttggtcctgatcccttcgcattcttcaaggttcgtcgtc |
366 |
Q |
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| T |
3452551 |
aaataccctcatattaaacaactctttggtcctgatcccttcgcattcttcaaggttcgtcgtc |
3452488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 23 - 157
Target Start/End: Original strand, 3457996 - 3458130
Alignment:
| Q |
23 |
atcatcagaaccatgtaaaaagaaatcatacggcatattgctgaagaaatacaaagaatcaagatgcagagaaagcagaaacaaagccaaacttcatact |
122 |
Q |
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| T |
3457996 |
atcatcagaaccatgtaaaaagaaatcatacggcatattgctgaagaaatacaaagaatcaagatgcagagaaagcagaaacaaagccaaacttcatact |
3458095 |
T |
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| Q |
123 |
tcttaaaaccaataagccatgatcgtaaaataagg |
157 |
Q |
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| T |
3458096 |
tcttaaaaccaacaagccatgatcgtaaaataagg |
3458130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 454 - 527
Target Start/End: Complemental strand, 3452315 - 3452241
Alignment:
| Q |
454 |
aaatgccatgtgtaacaatagtttttaggaaaaatattggtgggcccc-aaaccctttgacaccttgagagatat |
527 |
Q |
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| T |
3452315 |
aaatgccatgtgtaacaatagtttctaggaaaaatattggtgggccccaaaaccctttgacaccttgagagatat |
3452241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 382 - 414
Target Start/End: Complemental strand, 3452455 - 3452423
Alignment:
| Q |
382 |
agatctctaatgttacttcttagtatcgttgtt |
414 |
Q |
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| T |
3452455 |
agatctctaatgttacttcttattatcgttgtt |
3452423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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