View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1074_low_8 (Length: 580)
Name: NF1074_low_8
Description: NF1074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1074_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 509; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 8 - 536
Target Start/End: Original strand, 385959 - 386487
Alignment:
| Q |
8 |
tgaaatgaagaccatgggatattctgtggatgtgacagctagtgatgttttgatggtgtatatcaaggaaggttcggttgatcttgctttgaggtggctg |
107 |
Q |
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| T |
385959 |
tgaaatgaagacgatgggatattctgtggatgtgacagctagtgatgttttgatggtgtatatcaaggaaggttcggttgatcttgctttgaggtggctg |
386058 |
T |
|
| Q |
108 |
cgtttcatgggttcgtcaggtatcagaacaaataattttataatccgacagttgtttgagtcatgcatgaagaatgggatatacgagtcagccaagccac |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
386059 |
cgtttcatgggttcgtcaggtatcagaacaaataattttataatccgacagttgtttgagtcatgcatgaagaatgggatatacgagtcagccaagccac |
386158 |
T |
|
| Q |
208 |
ttcttgaaacatatgttaactccgctgcaaaagttgatttgattctttacacttcgattttagcgcatcttgttaggtgtcaggatgaagagaatgagag |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
386159 |
ttcttgaaacatatgttaactccgctgcaaaagttgatttcattctttacacttcgattttagcgcatcttgttaggtgtcaggatgaagagaatgagag |
386258 |
T |
|
| Q |
308 |
gcatttgatgtctatccttagtgcaacaaagcataaggcccactcgtttatgtgtggacttttcacagtccccgaacagaggggacaaccggtgttgact |
407 |
Q |
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| T |
386259 |
gcatttgatgtctatccttagtgcaacaaagcataaggcccactcgtttatgtgtggacttttcacaggccccgaacagaggggacaaccggtgttgact |
386358 |
T |
|
| Q |
408 |
tttgtaagggaattctttcaaagtattgattatgaattggaggaaggtgctgcaaagtactttgtcaatgttcttctcaattacctagttcttatgggac |
507 |
Q |
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| T |
386359 |
tttgtaagggaattctttcgaagtattgattatgaattggaggaaggtgctgcaaagtactttgtcaatgttcttctcaattacctagttcttatgggac |
386458 |
T |
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| Q |
508 |
agataaatcgagcttgatgtgtttggaag |
536 |
Q |
| |
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| T |
386459 |
agataaatcgagctcgatgtgtttggaag |
386487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 8 - 536
Target Start/End: Complemental strand, 38729583 - 38729055
Alignment:
| Q |
8 |
tgaaatgaagaccatgggatattctgtggatgtgacagctagtgatgttttgatggtgtatatcaaggaaggttcggttgatcttgctttgaggtggctg |
107 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||| |
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| T |
38729583 |
tgaaatgaagacaatgggatattctgtggatgtgacagctagtgatgttttgatggtgtatatcaaggaaggttcagtcgatcttgctttgagatggcta |
38729484 |
T |
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| Q |
108 |
cgtttcatgggttcgtcaggtatcagaacaaataattttataatccgacagttgtttgagtcatgcatgaagaatgggatatacgagtcagccaagccac |
207 |
Q |
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|||||||||||||| ||||| |||||||| ||||||||||||||| | |||||||||||||| |||||||| |||||||||||||| ||||||||||| | |
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| T |
38729483 |
cgtttcatgggttcctcagggatcagaaccaataattttataatcaggcagttgtttgagtcgtgcatgaaaaatgggatatacgaatcagccaagcctc |
38729384 |
T |
|
| Q |
208 |
ttcttgaaacatatgttaactccgctgcaaaagttgatttgattctttacacttcgattttagcgcatcttgttaggtgtcaggatgaagagaatgagag |
307 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38729383 |
ttcttgaaacatatgtgaactccgctgcaaaagttgatttgatactttacacttcgattttagcgcatcttgttaggtgtcaggatgaagagaatgagag |
38729284 |
T |
|
| Q |
308 |
gcatttgatgtctatccttagtgcaacaaagcataaggcccactcgtttatgtgtggacttttcacagtccccgaacagaggggacaaccggtgttgact |
407 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||| |
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| T |
38729283 |
gcatttgatgtctatccttagtgcaacaaagcataaggcgcactcgtttatgtgtggactattcacaggccccgaacagaggggacagccggtgttgaca |
38729184 |
T |
|
| Q |
408 |
tttgtaagggaattctttcaaagtattgattatgaattggaggaaggtgctgcaaagtactttgtcaatgttcttctcaattacctagttcttatgggac |
507 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
38729183 |
tttgtaagagaattctttcaaagtattgattatgaattggaggaaggtgctgcaaagtactttgtcaatgttcttctcaattatctagttcttatgggac |
38729084 |
T |
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| Q |
508 |
agataaatcgagcttgatgtgtttggaag |
536 |
Q |
| |
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|||||||||||||| | |||||||||||| |
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| T |
38729083 |
agataaatcgagctcggtgtgtttggaag |
38729055 |
T |
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