View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10750_low_10 (Length: 213)
Name: NF10750_low_10
Description: NF10750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10750_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 20 - 195
Target Start/End: Original strand, 40891123 - 40891298
Alignment:
| Q |
20 |
gcattgtttttgcaataataaatgccttatcatcacacgtgaaacgttctccatccgacatcccatagaatgttagtgatttcaacgaaggacaactttg |
119 |
Q |
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| T |
40891123 |
gcattttttttgcaataataaatgccttatcatcacacgtgaagtgttctccatccgacatcgcatagaatgttagtgatttcaacgcaggacaactttg |
40891222 |
T |
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| Q |
120 |
gccaataacttcaagagatatattagattctaagcattctgaaatgtaaatctcctctaacaggggaaatttcttt |
195 |
Q |
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| T |
40891223 |
cccaataacttcaagagatatattagattctaagcattatgaaatgtaaatctcctctaacaggggaaatttcttt |
40891298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 9e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 38285670 - 38285495
Alignment:
| Q |
18 |
aggcattgtttttgcaataataaatgccttatcatcacacgtgaaacgttctccatccgacatcccatagaatgttagtgatttcaacgaaggacaactt |
117 |
Q |
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| T |
38285670 |
aggcattgtctttgcaataataaatgcct---catcgcacttgctgcggcctccataggacatcccattatatactagtgatttcaacaaaggacaattt |
38285574 |
T |
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| Q |
118 |
tggccaataacttcaagagatatattagattctaagcattctgaaatgtaaatctcctctaacaggggaaatttctttg |
196 |
Q |
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| T |
38285573 |
tggccaataacttcaagagatatcttagtttggaagccgtgtgaaatgtcaatctcctctaacaggggaaatttctttg |
38285495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 196
Target Start/End: Original strand, 30621588 - 30621766
Alignment:
| Q |
18 |
aggcattgtttttgcaataataaatgccttatcatcacacgtgaaacgttctccatccgacatcccatagaatgttagtgatttcaacgaaggacaactt |
117 |
Q |
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| T |
30621588 |
aggcattgtttttgcaataataaatgcctcatcatcacacttgaagcggcctctatacgacgccccgttaaatgttagcgatctcaaaagaggacaactt |
30621687 |
T |
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| Q |
118 |
tggccaataacttcaagagatatattagattctaagcattctgaaatgtaaatctcctctaacaggggaaatttctttg |
196 |
Q |
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| T |
30621688 |
tgaccaataacttcaagagatttcccagattggatgccatatgaaatgttaatctcctctaacaggggaaacttctttg |
30621766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 196
Target Start/End: Original strand, 51946161 - 51946245
Alignment:
| Q |
112 |
caactttggccaataacttcaagagatatattagattctaagcattctgaaatgtaaatctcctctaacaggggaaatttctttg |
196 |
Q |
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| T |
51946161 |
caactttggccaacaacttcaagagatttctcagattggaagccatgtgaaatgtcaacctcctctaatagtggaaacttctttg |
51946245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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