View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10750_low_4 (Length: 291)

Name: NF10750_low_4
Description: NF10750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10750_low_4
NF10750_low_4
[»] chr4 (3 HSPs)
chr4 (123-265)||(43487489-43487631)
chr4 (18-79)||(43487428-43487489)
chr4 (157-221)||(44796971-44797035)
[»] chr7 (1 HSPs)
chr7 (135-195)||(21139028-21139089)
[»] chr2 (1 HSPs)
chr2 (164-220)||(36281678-36281734)
[»] chr5 (1 HSPs)
chr5 (155-222)||(12264837-12264904)
[»] chr3 (2 HSPs)
chr3 (163-222)||(32804548-32804607)
chr3 (169-213)||(4201394-4201438)
[»] scaffold0018 (1 HSPs)
scaffold0018 (157-222)||(192257-192322)
[»] scaffold0004 (1 HSPs)
scaffold0004 (157-222)||(92793-92858)
[»] chr6 (3 HSPs)
chr6 (172-213)||(25038088-25038129)
chr6 (169-213)||(31579242-31579286)
chr6 (157-213)||(34073364-34073420)
[»] chr1 (1 HSPs)
chr1 (157-213)||(25452165-25452221)


Alignment Details
Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 123 - 265
Target Start/End: Original strand, 43487489 - 43487631
Alignment:
Q  123 tgcactcttatatatgacgcacggatacagaaacgacacagacatgccaacaccgttaataaattgagaaaattgcataattaagtgtaatcacatgtgt 222  Q
    ||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||    
T  43487489 tgcactcttatctatgacgtacggatacagaaacgacacaggcatgccaacaccgctaataaattgtgaaaatttcataattaagtgtaatcacatgtgt 43487588  T
Q  223 gagtgatttcaagacacacctaatttaaggaatgttcgtgctt 265  Q
    ||||||||||| |||||||||  ||||||||||||||||||||    
T  43487589 gagtgatttcaggacacaccttttttaaggaatgttcgtgctt 43487631  T

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Target: chr4; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 43487428 - 43487489
Alignment:
Q  18 tgaagttacttccacatttcacctgtacagatataacaagtgacatatgatatttttgtttt 79  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43487428 tgaagttacttccacatttcacctgtacagatataacaagtgacatatgatatttttgtttt 43487489  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 44797035 - 44796971
Alignment:
Q  157 gacacagacatgccaacaccgttaataaattgagaaaattgcataattaagtgtaatcacatgtg 221  Q
    |||||||||||| ||||||||  ||||| ||||||||||  ||||||| | |||||| |||||||    
T  44797035 gacacagacatgtcaacaccgacaataatttgagaaaataacataattcaatgtaattacatgtg 44796971  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 195
Target Start/End: Complemental strand, 21139089 - 21139028
Alignment:
Q  135 tatgacgcacggatacagaaac-gacacagacatgccaacaccgttaataaattgagaaaat 195  Q
    ||||| ||||||||||||| || ||||| |||||| ||||||||||||||| ||||||||||    
T  21139089 tatgaagcacggatacagacacagacactgacatgtcaacaccgttaataatttgagaaaat 21139028  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 220
Target Start/End: Original strand, 36281678 - 36281734
Alignment:
Q  164 acatgccaacaccgttaataaattgagaaaattgcataattaagtgtaatcacatgt 220  Q
    ||||||||| ||||||||||| ||||||||||  ||||||| |||||||||| ||||    
T  36281678 acatgccaataccgttaataatttgagaaaatcacataatttagtgtaatcatatgt 36281734  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 222
Target Start/End: Complemental strand, 12264904 - 12264837
Alignment:
Q  155 acgacacagacatgccaacaccgttaataaattgagaaaattgcataattaagtgtaatcacatgtgt 222  Q
    ||||||| ||||||||||||||| |||| | ||||||||||| ||| ||| |||||||| | ||||||    
T  12264904 acgacactgacatgccaacaccgctaattatttgagaaaattacatgattcagtgtaattatatgtgt 12264837  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 163 - 222
Target Start/End: Complemental strand, 32804607 - 32804548
Alignment:
Q  163 gacatgccaacaccgttaataaattgagaaaattgcataattaagtgtaatcacatgtgt 222  Q
    |||||||| ||||||||||||| ||||||||||  ||||||| |||||||| | ||||||    
T  32804607 gacatgccgacaccgttaataatttgagaaaatcacataatttagtgtaattatatgtgt 32804548  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 213
Target Start/End: Original strand, 4201394 - 4201438
Alignment:
Q  169 ccaacaccgttaataaattgagaaaattgcataattaagtgtaat 213  Q
    |||||||||||||||| |||| |||||  ||||||||||||||||    
T  4201394 ccaacaccgttaataatttgaaaaaatcacataattaagtgtaat 4201438  T

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Target: scaffold0018 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 222
Target Start/End: Complemental strand, 192322 - 192257
Alignment:
Q  157 gacacagacatgccaacaccgttaataaattgagaaaattgcataattaagtgtaatcacatgtgt 222  Q
    ||||| |||| ||| ||||||||||||| ||||||||||| |||||||  ||||||| ||| ||||    
T  192322 gacactgacacgccgacaccgttaataatttgagaaaattacataattcggtgtaattacaagtgt 192257  T

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Target: scaffold0004 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 222
Target Start/End: Original strand, 92793 - 92858
Alignment:
Q  157 gacacagacatgccaacaccgttaataaattgagaaaattgcataattaagtgtaatcacatgtgt 222  Q
    ||||| |||| ||| |||||| |||||| ||||||||||| ||||||| |||||||| ||| ||||    
T  92793 gacactgacacgccgacaccgctaataatttgagaaaattacataattcagtgtaattacaagtgt 92858  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 213
Target Start/End: Complemental strand, 25038129 - 25038088
Alignment:
Q  172 acaccgttaataaattgagaaaattgcataattaagtgtaat 213  Q
    ||||||||||||| ||||||||||| ||||||| ||||||||    
T  25038129 acaccgttaataatttgagaaaattacataatttagtgtaat 25038088  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 213
Target Start/End: Complemental strand, 31579286 - 31579242
Alignment:
Q  169 ccaacaccgttaataaattgagaaaattgcataattaagtgtaat 213  Q
    |||||||||||||||| ||||||||||  ||||||| ||||||||    
T  31579286 ccaacaccgttaataatttgagaaaatcacataattcagtgtaat 31579242  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 213
Target Start/End: Complemental strand, 34073420 - 34073364
Alignment:
Q  157 gacacagacatgccaacaccgttaataaattgagaaaattgcataattaagtgtaat 213  Q
    ||||| |||||||||||| || |||||| ||||||||||  ||||||| ||||||||    
T  34073420 gacactgacatgccaacatcgctaataatttgagaaaatctcataattcagtgtaat 34073364  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 213
Target Start/End: Complemental strand, 25452221 - 25452165
Alignment:
Q  157 gacacagacatgccaacaccgttaataaattgagaaaattgcataattaagtgtaat 213  Q
    ||||| ||||||||||||| | |||||| ||||||||||  ||||||| ||||||||    
T  25452221 gacaccgacatgccaacactgctaataatttgagaaaatctcataattcagtgtaat 25452165  T

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