View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10750_low_6 (Length: 276)
Name: NF10750_low_6
Description: NF10750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10750_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 20 - 259
Target Start/End: Original strand, 40891123 - 40891362
Alignment:
| Q |
20 |
gcattgtttttgcaataataaatgccttatcatcacacgtgaaacgttctccatccgacatcccatagaatgttagtgatttcaacgaaggacaactttg |
119 |
Q |
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| T |
40891123 |
gcattttttttgcaataataaatgccttatcatcacacgtgaagtgttctccatccgacatcgcatagaatgttagtgatttcaacgcaggacaactttg |
40891222 |
T |
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| Q |
120 |
gccaataacttcaagagatatattagattctaagcattctgaaatgtaaatctcctctaacaggggaaatttctttgcaacttcacaccacccttcatat |
219 |
Q |
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| T |
40891223 |
cccaataacttcaagagatatattagattctaagcattatgaaatgtaaatctcctctaacaggggaaatttctttacaaattcgcaccacccttcatat |
40891322 |
T |
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| Q |
220 |
gatattctatcgcatgaatcaagtcgtaagcaccttaagt |
259 |
Q |
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| T |
40891323 |
gatattctatcgcatgaatcaagttgtaagcaccttaagt |
40891362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 257
Target Start/End: Original strand, 30621588 - 30621827
Alignment:
| Q |
18 |
aggcattgtttttgcaataataaatgccttatcatcacacgtgaaacgttctccatccgacatcccatagaatgttagtgatttcaacgaaggacaactt |
117 |
Q |
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| T |
30621588 |
aggcattgtttttgcaataataaatgcctcatcatcacacttgaagcggcctctatacgacgccccgttaaatgttagcgatctcaaaagaggacaactt |
30621687 |
T |
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| Q |
118 |
tggccaataacttcaagagatatattagattctaagcattctgaaatgtaaatctcctctaacaggggaaatttctttgcaacttcacaccacccttcat |
217 |
Q |
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| T |
30621688 |
tgaccaataacttcaagagatttcccagattggatgccatatgaaatgttaatctcctctaacaggggaaacttctttgcaactttgcaccaaccttcat |
30621787 |
T |
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| Q |
218 |
atgatattctatcgcatgaatcaagtcgtaagcaccttaa |
257 |
Q |
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| T |
30621788 |
ttgaaactctactgcatgaatcaagtcatatgcaccttaa |
30621827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 112 - 261
Target Start/End: Original strand, 51946161 - 51946310
Alignment:
| Q |
112 |
caactttggccaataacttcaagagatatattagattctaagcattctgaaatgtaaatctcctctaacaggggaaatttctttgcaacttcacaccacc |
211 |
Q |
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| T |
51946161 |
caactttggccaacaacttcaagagatttctcagattggaagccatgtgaaatgtcaacctcctctaatagtggaaacttctttgcaacttcacaccatc |
51946260 |
T |
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| Q |
212 |
cttcatatgatattctatcgcatgaatcaagtcgtaagcaccttaagtga |
261 |
Q |
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| T |
51946261 |
ctttatctgaaattctctcgaaggattcaagttgtaggcatcttaagtga |
51946310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 217
Target Start/End: Complemental strand, 38285670 - 38285474
Alignment:
| Q |
18 |
aggcattgtttttgcaataataaatgccttatcatcacacgtgaaacgttctccatccgacatcccatagaatgttagtgatttcaacgaaggacaactt |
117 |
Q |
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| T |
38285670 |
aggcattgtctttgcaataataaatgcct---catcgcacttgctgcggcctccataggacatcccattatatactagtgatttcaacaaaggacaattt |
38285574 |
T |
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| Q |
118 |
tggccaataacttcaagagatatattagattctaagcattctgaaatgtaaatctcctctaacaggggaaatttctttgcaacttcacaccacccttcat |
217 |
Q |
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| T |
38285573 |
tggccaataacttcaagagatatcttagtttggaagccgtgtgaaatgtcaatctcctctaacaggggaaatttctttgcagcttcacaccatccttcat |
38285474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 205
Target Start/End: Original strand, 16644210 - 16644256
Alignment:
| Q |
159 |
tgaaatgtaaatctcctctaacaggggaaatttctttgcaacttcac |
205 |
Q |
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| T |
16644210 |
tgaaatgtcaagctcctctaacagtggaaatttgtttgcaacttcac |
16644256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 205
Target Start/End: Original strand, 17618571 - 17618617
Alignment:
| Q |
159 |
tgaaatgtaaatctcctctaacaggggaaatttctttgcaacttcac |
205 |
Q |
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| T |
17618571 |
tgaaatgtcaagctcctctaacagtggaaatttgtttgcaacttcac |
17618617 |
T |
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