View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10750_low_7 (Length: 260)
Name: NF10750_low_7
Description: NF10750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10750_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 37419566 - 37419323
Alignment:
| Q |
1 |
taagaagaaatttacattgttgtatcaaagtaaataactaaatttgtaattagtaagtaatatacaaggctcgggagactttttaataattgttctctgg |
100 |
Q |
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| T |
37419566 |
taagaagaaatttacattgttgtatcaaagtaaataactaaatttgtaattagtaagtaatatacaaggctcgggagactttttaataattgttctctgg |
37419467 |
T |
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| Q |
101 |
tgattaaaatactttagcatattatatgattatgaagttttgaactttcactagtgaaaaattgtctaatggttcatttcatttactctatctcttggat |
200 |
Q |
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| T |
37419466 |
tgattaaaatactttagcatattatatgattatgaagttttgaactttcactagtgataaattgtctaatggttcatttcatttactctatctcttggat |
37419367 |
T |
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| Q |
201 |
aatttcataatcgttgttctaacatgacaggctccctatgcttt |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37419366 |
aatttcataatcgttgttctaacatgacaggctccctatgcttt |
37419323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 37428020 - 37427906
Alignment:
| Q |
1 |
taagaagaaatttacattgttgtatcaaagtaaataactaaatttgtaattagtaagtaatatacaaggctcgggagactttttaataattgttctctgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||| |
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| T |
37428020 |
taagaagaaatttacattgttgtatcaaagtaaataactaaatttgtaattagtaagtaaaatacaaggctagggaaactttttaataattgttctctgg |
37427921 |
T |
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| Q |
101 |
tgattaaaatacttt |
115 |
Q |
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| T |
37427920 |
tggttaaaacacttt |
37427906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 152 - 227
Target Start/End: Complemental strand, 37427902 - 37427826
Alignment:
| Q |
152 |
tagtgaaaaattgtctaatggttcatttcatttactctatctcttggataatttcataat-cgttgttctaacatga |
227 |
Q |
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||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||| |
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| T |
37427902 |
tagtgaaaaattgtctaattgttcatttcatttactcaatctcttggataatttcttaatatgttgttctaacatga |
37427826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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