View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10750_low_9 (Length: 226)

Name: NF10750_low_9
Description: NF10750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10750_low_9
NF10750_low_9
[»] chr4 (22 HSPs)
chr4 (1-97)||(23401935-23402031)
chr4 (1-103)||(24307084-24307186)
chr4 (1-106)||(26832596-26832701)
chr4 (1-97)||(23408861-23408957)
chr4 (1-106)||(23416018-23416123)
chr4 (1-106)||(23868593-23868698)
chr4 (1-106)||(26433885-26433990)
chr4 (1-106)||(26435665-26435770)
chr4 (1-106)||(23885688-23885793)
chr4 (1-100)||(34662359-34662458)
chr4 (1-94)||(23453696-23453789)
chr4 (137-203)||(23408755-23408821)
chr4 (137-203)||(23402071-23402137)
chr4 (137-203)||(23453587-23453653)
chr4 (141-203)||(26435805-26435867)
chr4 (141-203)||(26832736-26832798)
chr4 (141-203)||(23415924-23415986)
chr4 (141-203)||(23868733-23868795)
chr4 (141-203)||(23885828-23885890)
chr4 (141-203)||(24307224-24307286)
chr4 (141-203)||(26434025-26434087)
chr4 (141-203)||(34662256-34662318)


Alignment Details
Target: chr4 (Bit Score: 89; Significance: 5e-43; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 23401935 - 23402031
Alignment:
Q  1 agaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggtggttc 97  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23401935 agaaacccgctgaggagaagaagtccaccgtcgccgagaaggctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggtggttc 23402031  T

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Target: chr4; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 24307084 - 24307186
Alignment:
Q  1 agaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggtggttcagc 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  24307084 agaaacccgcagaggagaagaagtccaccgtcgccgagaaggctcctgctgagaagaagccaaaggcaggaaagaagctaccaaaggaaggtggttccgc 24307183  T
Q  101 tgc 103  Q
    |||    
T  24307184 tgc 24307186  T

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Target: chr4; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 26832596 - 26832701
Alignment:
Q  1 agaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggtggttcagc 100  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  26832596 agaaaccagcagaggagaagaagtccaccgtcgctgagaaagctccggcggagaagaagccaaaggccggaaagaagcttccaaaggaaggtggttcagc 26832695  T
Q  101 tgccgg 106  Q
     |||||    
T  26832696 cgccgg 26832701  T

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Target: chr4; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 23408957 - 23408861
Alignment:
Q  1 agaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggtggttc 97  Q
    |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  23408957 agaaacccgctgaggagaagaagtccaccgtcgccgagaaggctccggcggagaagaagcccaaggcaggaaagaagctaccaaaggaaggtggttc 23408861  T

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Target: chr4; HSP #5
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 23416123 - 23416018
Alignment:
Q  1 agaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggtggttcagc 100  Q
    ||||||| || |||||||||||||||||||| |||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  23416123 agaaaccagctgaggagaagaagtccaccgttgccgagaaagctccagcagagaagaagccaaaggcagggaagaagctaccaaaggaaggtggttcagc 23416024  T
Q  101 tgccgg 106  Q
    ||||||    
T  23416023 tgccgg 23416018  T

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Target: chr4; HSP #6
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 23868593 - 23868698
Alignment:
Q  1 agaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggtggttcagc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||||||||| ||||||||||||||||||||    
T  23868593 agaaacccgcagaggagaagaagtccaccgtcgccgagaaagctcctgctgagaagaagcccaaggctggaaagaagcttccaaaggaaggtggttcagc 23868692  T
Q  101 tgccgg 106  Q
     |||||    
T  23868693 cgccgg 23868698  T

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Target: chr4; HSP #7
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 26433885 - 26433990
Alignment:
Q  1 agaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggtggttcagc 100  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||    
T  26433885 agaaaccagcagaggagaagaagtccaccgtcgctgagaaagctccggcggagaagaagccgaaggccggaaagaagcttccaaaggaaggtggttcagc 26433984  T
Q  101 tgccgg 106  Q
     |||||    
T  26433985 cgccgg 26433990  T

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Target: chr4; HSP #8
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 26435665 - 26435770
Alignment:
Q  1 agaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggtggttcagc 100  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||    
T  26435665 agaaaccagcagaggagaagaagtccaccgtcgctgagaaagctccggcggagaagaagccgaaggccggaaagaagcttccaaaggaaggtggttcagc 26435764  T
Q  101 tgccgg 106  Q
     |||||    
T  26435765 cgccgg 26435770  T

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Target: chr4; HSP #9
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 23885688 - 23885793
Alignment:
Q  1 agaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggtggttcagc 100  Q
    ||||||| || ||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||||||||| ||||||||||||||||||||    
T  23885688 agaaaccagctgaggagaagaagtccaccgtcgccgagaaagctcctgctgagaagaagcccaaggctggaaagaagcttccaaaggaaggtggttcagc 23885787  T
Q  101 tgccgg 106  Q
     |||||    
T  23885788 cgccgg 23885793  T

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Target: chr4; HSP #10
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 34662458 - 34662359
Alignment:
Q  1 agaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggtggttcagc 100  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||| | ||||||||    
T  34662458 agaaacctgcagaggagaagaaatccaccgtcgccgagaaagctccggcagagaagaagccaaaggccggaaagaagcttccaaaggaaagcggttcagc 34662359  T

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Target: chr4; HSP #11
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 23453789 - 23453696
Alignment:
Q  1 agaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggtgg 94  Q
    ||||||| || |||||||||||||||||||| |||||||||||||| || ||||||||||||||||| ||||||||||| || |||||||||||    
T  23453789 agaaacctgctgaggagaagaagtccaccgttgccgagaaagctccagcagagaagaagccaaaggctggaaagaagcttcctaaggaaggtgg 23453696  T

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Target: chr4; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 137 - 203
Target Start/End: Complemental strand, 23408821 - 23408755
Alignment:
Q  137 tgtagaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctca 203  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  23408821 tgtagaaacatacaagatctacatcttcaaagttctgaaacaagttcacccagacattggtatctca 23408755  T

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Target: chr4; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 137 - 203
Target Start/End: Original strand, 23402071 - 23402137
Alignment:
Q  137 tgtagaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctca 203  Q
    |||||||||||||||||||||||| |||||||| ||||| || ||||||||||||||||||||||||    
T  23402071 tgtagaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctca 23402137  T

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Target: chr4; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 137 - 203
Target Start/End: Complemental strand, 23453653 - 23453587
Alignment:
Q  137 tgtagaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctca 203  Q
    |||||||||||||||||||||||| |||||||| ||||| || ||||||||||||||||||||||||    
T  23453653 tgtagaaacatacaagatctacatcttcaaagttctgaatcatgttcacccagacattggtatctca 23453587  T

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Target: chr4; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 141 - 203
Target Start/End: Original strand, 26435805 - 26435867
Alignment:
Q  141 gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctca 203  Q
    |||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||    
T  26435805 gaaacatacaagatctacatcttcaaggttctgaaacaagttcacccagacattggtatctca 26435867  T

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Target: chr4; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 141 - 203
Target Start/End: Original strand, 26832736 - 26832798
Alignment:
Q  141 gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctca 203  Q
    |||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||    
T  26832736 gaaacatacaagatctacatcttcaaggttctgaaacaagttcacccagacattggtatctca 26832798  T

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Target: chr4; HSP #17
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 141 - 203
Target Start/End: Complemental strand, 23415986 - 23415924
Alignment:
Q  141 gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctca 203  Q
    |||||||||||||||||||| |||||||| ||||| || ||||||||||||||||||||||||    
T  23415986 gaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctca 23415924  T

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Target: chr4; HSP #18
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 141 - 203
Target Start/End: Original strand, 23868733 - 23868795
Alignment:
Q  141 gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctca 203  Q
    |||||||||||||||||||| |||||||| ||||| || ||||||||||||||||||||||||    
T  23868733 gaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctca 23868795  T

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Target: chr4; HSP #19
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 141 - 203
Target Start/End: Original strand, 23885828 - 23885890
Alignment:
Q  141 gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctca 203  Q
    |||||||||||||||||||| |||||||| ||||| || ||||||||||||||||||||||||    
T  23885828 gaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctca 23885890  T

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Target: chr4; HSP #20
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 141 - 203
Target Start/End: Original strand, 24307224 - 24307286
Alignment:
Q  141 gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctca 203  Q
    ||||||||||||||||| || ||||| || |||||||||||||||||||||||||||||||||    
T  24307224 gaaacatacaagatctatatcttcaaggttctgaaacaagttcacccagacattggtatctca 24307286  T

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Target: chr4; HSP #21
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 141 - 203
Target Start/End: Original strand, 26434025 - 26434087
Alignment:
Q  141 gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctca 203  Q
    |||||||||||||||||||| ||||| || |||||||||||||| ||||||||||||||||||    
T  26434025 gaaacatacaagatctacatcttcaaggttctgaaacaagttcatccagacattggtatctca 26434087  T

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Target: chr4; HSP #22
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 141 - 203
Target Start/End: Complemental strand, 34662318 - 34662256
Alignment:
Q  141 gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctca 203  Q
    ||||| |||||||||||||| ||||| || ||||||||||||||||| |||||||||||||||    
T  34662318 gaaacctacaagatctacatcttcaaggttctgaaacaagttcaccctgacattggtatctca 34662256  T

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