View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10751_high_12 (Length: 248)
Name: NF10751_high_12
Description: NF10751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10751_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 21 - 237
Target Start/End: Original strand, 53127279 - 53127495
Alignment:
| Q |
21 |
gtattgagattaactacaagacatgaagaagataaaaacatgaagataaaatcaaatatagaaatcaatagtccttaattcttaccgctcaacatttcct |
120 |
Q |
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| T |
53127279 |
gtattgagattaactacatgacattaagaagataaaaacatgaagataaaatcaaatatagaaatcaatagtccttaattcttaccgctcaacatttcct |
53127378 |
T |
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| Q |
121 |
ctgttatcttcatcaggtcatagtaatccgcaaaaggcatatagaactcacaagttgtgaactcaggattgtgggtcaagtccataccctcatttctata |
220 |
Q |
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| T |
53127379 |
ctgttatcttcatcaggtcatagtaatccgcaaaaggcatatagaactcacaagttgtgaactcaggattgtgggtcaagtccataccctcatttctata |
53127478 |
T |
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| Q |
221 |
ttgtttaccgatttcat |
237 |
Q |
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||||||||||||||||| |
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| T |
53127479 |
ttgtttaccgatttcat |
53127495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 62 - 237
Target Start/End: Original strand, 53109475 - 53109653
Alignment:
| Q |
62 |
gaagataaaatcaaatatagaaatcaatagtccttaat---tcttaccgctcaacatttcctctgttatcttcatcaggtcatagtaatccgcaaaaggc |
158 |
Q |
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| T |
53109475 |
gaagataaaatcaaatgtagcaatcaatagaccttaataattcttaccactcaacattttctctgttatccccattaggtcattatagtccatgtaagcc |
53109574 |
T |
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| Q |
159 |
atatagaactcacaagttgtgaactcaggattgtgggtcaagtccataccctcatttctatattgtttaccgatttcat |
237 |
Q |
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| T |
53109575 |
atataaaactcacatgcagtgaactcaggattgtgtgtcatgtctataccctcatttctaaattgtttaccaatttcat |
53109653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 62 - 237
Target Start/End: Original strand, 53114897 - 53115075
Alignment:
| Q |
62 |
gaagataaaatcaaatatagaaatcaatagtccttaat---tcttaccgctcaacatttcctctgttatcttcatcaggtcatagtaatccgcaaaaggc |
158 |
Q |
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||||||||| |||||||||| ||||||||||||||||| ||||||| ||||||||| ||||||||||| ||| ||||| | ||| || | ||| | |
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| T |
53114897 |
gaagataaattcaaatatagcaatcaatagtccttaataattcttaccactcaacattctctctgttatctccattaggtcgttgtattcattataagcc |
53114996 |
T |
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| Q |
159 |
atatagaactcacaagttgtgaactcaggattgtgggtcaagtccataccctcatttctatattgtttaccgatttcat |
237 |
Q |
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||||| |||||||| || |||||||| ||||| || || | ||| ||| ||||||||||| |||||||||| ||||||| |
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| T |
53114997 |
atataaaactcacaggtagtgaactccggattatgtgtaaggtctatatcctcatttctaaattgtttaccaatttcat |
53115075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 104 - 237
Target Start/End: Complemental strand, 15839637 - 15839504
Alignment:
| Q |
104 |
accgctcaacatttcctctgttatcttcatcaggtcatagtaatccgcaaaaggcatatagaactcacaagttgtgaactcaggattgtgggtcaagtcc |
203 |
Q |
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|||||||||||| | ||||||||||| ||| | ||| ||||| ||| ||| ||||||||||||||| || || || |||||||| || ||||| || |
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| T |
15839637 |
accgctcaacatgttctctgttatctccattaagtcgtagtagtccttgtaagccatatagaactcacaggtagtaaattcaggattatgagtcaaatct |
15839538 |
T |
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| Q |
204 |
ataccctcatttctatattgtttaccgatttcat |
237 |
Q |
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|| |||||||| ||| |||||||||| ||||||| |
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| T |
15839537 |
atgccctcattcctaaattgtttaccaatttcat |
15839504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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