View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10751_high_19 (Length: 239)

Name: NF10751_high_19
Description: NF10751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10751_high_19
NF10751_high_19
[»] chr4 (1 HSPs)
chr4 (17-113)||(56226561-56226657)
[»] chr1 (1 HSPs)
chr1 (19-116)||(11937930-11938027)
[»] chr6 (1 HSPs)
chr6 (24-116)||(8554837-8554929)
[»] chr5 (1 HSPs)
chr5 (24-116)||(7806649-7806741)


Alignment Details
Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 17 - 113
Target Start/End: Complemental strand, 56226657 - 56226561
Alignment:
Q  17 atgaatcattcatttgagacaaaacgaagggtattatttacatctaaaggcaaaatgataggcacttgtggggtttattgtgtgaactcaggagtaa 113  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56226657 atgaatcattcatttgagacaaaacgaaggatattatttacatctaaaggcaaaatgataggcacttgtggggtttattgtgtgaactcaggagtaa 56226561  T

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Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 116
Target Start/End: Complemental strand, 11938027 - 11937930
Alignment:
Q  19 gaatcattcatttgagacaaaacgaagggtattatttacatctaaaggcaaaatgataggcacttgtggggtttattgtgtgaactcaggagtaaata 116  Q
    |||| ||||||| |||| |||| ||| | ||| ||||| |||| ||||||||||||| || |||||||||||||||| |||||||| |||||||||||    
T  11938027 gaattattcattcgagagaaaatgaaagatatgatttagatctgaaggcaaaatgattggaacttgtggggtttattttgtgaactgaggagtaaata 11937930  T

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Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 24 - 116
Target Start/End: Original strand, 8554837 - 8554929
Alignment:
Q  24 attcatttgagacaaaacgaagggtattatttacatctaaaggcaaaatgataggcacttgtggggtttattgtgtgaactcaggagtaaata 116  Q
    ||||||| |||| |||| ||| | ||| ||||| |||| ||||||||||||| || |||||||||||||||| |||||||| |||||||||||    
T  8554837 attcattcgagagaaaatgaaagatatgatttagatctgaaggcaaaatgattggaacttgtggggtttattttgtgaactgaggagtaaata 8554929  T

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Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 7806741 - 7806649
Alignment:
Q  24 attcatttgagacaaaacgaagggtattatttacatctaaaggcaaaatgataggcacttgtggggtttattgtgtgaactcaggagtaaata 116  Q
    ||||||| |||| |||| ||| | ||| ||||| |||| ||||||||||||| || |||||||||||||||| |||||||| |||||||||||    
T  7806741 attcattcgagagaaaatgaaagatatgatttagatctgaaggcaaaatgattggaacttgtggggtttattttgtgaactgaggagtaaata 7806649  T

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