View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10751_high_2 (Length: 502)
Name: NF10751_high_2
Description: NF10751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10751_high_2 |
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| [»] scaffold0361 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 169; Significance: 2e-90; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 270 - 492
Target Start/End: Complemental strand, 53538952 - 53538732
Alignment:
| Q |
270 |
ttgttaacaaagaattagtaacttaaagtttctgctgctatcttaatgctactctcacacctcaannnnnnngatattatatccttagtttattaaattt |
369 |
Q |
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| T |
53538952 |
ttgttaacaaagaattagtaacttaaagtttctgctgctatcttaatgctattctcacacctcaatttttt-gatattatatccttagtttgttaaattt |
53538854 |
T |
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| Q |
370 |
tgtaatctctgtatccctttcctttttcttttcaagccattgcatgttaacatttctttgctttggttggtttcatacatggtctctcattaacatgtcc |
469 |
Q |
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| T |
53538853 |
tgtaatccctgtacccctttcctttttcttttca-gccattgcatgttaacatttctttgctttggttggtttcatacatggtctctcattaacatgtcc |
53538755 |
T |
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| Q |
470 |
cctcactcattagtcttctctct |
492 |
Q |
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| T |
53538754 |
cctcactcattagtcttttctct |
53538732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 23 - 147
Target Start/End: Complemental strand, 12807450 - 12807326
Alignment:
| Q |
23 |
agtctatatgaatgaacctgttgaagttgcaaacttcgaacatggagttggacatctttaatgtatgtaagtgtatatgttgtaaggtgatggatttgtt |
122 |
Q |
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| T |
12807450 |
agtctatacaaacgaacctgtcgaagctgcaaacttaccacatggagttggacatctttaatgtatgtttgtgtaaatattgtaagttgttggatttgtt |
12807351 |
T |
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| Q |
123 |
gatccgttagtggaaggatgttgtt |
147 |
Q |
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| T |
12807350 |
gatatgttagtggaaggatgttgtt |
12807326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 20 - 147
Target Start/End: Complemental strand, 14458369 - 14458242
Alignment:
| Q |
20 |
aagagtctatatgaatgaacctgttgaagttgcaaacttcgaacatggagttggacatctttaatgtatgtaagtgtatatgttgtaaggtgatggattt |
119 |
Q |
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| T |
14458369 |
aagagtctatacaaacgaacctatcgaagctgcaaacttaccacatggagttggacatctttaatgtatgtttgtgtaaatgtcgtaagttgttggattt |
14458270 |
T |
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| Q |
120 |
gttgatccgttagtggaaggatgttgtt |
147 |
Q |
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| T |
14458269 |
gttggtatgttagtggaaggatgttgtt |
14458242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 226 - 276
Target Start/End: Complemental strand, 38508845 - 38508795
Alignment:
| Q |
226 |
ggaagtttaatttactgttgaaatgcaaaggtaaggtgcattctttgttaa |
276 |
Q |
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| T |
38508845 |
ggaagtttaatttactgttgaaatgcagaggtaatctgcattctttgttaa |
38508795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 94 - 138
Target Start/End: Complemental strand, 12807130 - 12807086
Alignment:
| Q |
94 |
tgtatatgttgtaaggtgatggatttgttgatccgttagtggaag |
138 |
Q |
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| T |
12807130 |
tgtaaatgttgtaaggtgatggatttgttgatgtgttagaggaag |
12807086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 94 - 138
Target Start/End: Complemental strand, 14458046 - 14458002
Alignment:
| Q |
94 |
tgtatatgttgtaaggtgatggatttgttgatccgttagtggaag |
138 |
Q |
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| T |
14458046 |
tgtaaatgttgtaaggtgatggatttgttgatgtgttagaggaag |
14458002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 3e-37; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 381 - 480
Target Start/End: Complemental strand, 7120174 - 7120075
Alignment:
| Q |
381 |
tatccctttcctttttcttttcaagccattgcatgttaacatttctttgctttggttggtttcatacatggtctctcattaacatgtcccctcactcatt |
480 |
Q |
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| T |
7120174 |
tatccctttccttattcttttcaagccattgcatgttaacatttctttgctttggttggttctatacatggtctctcattaacatttcctctcactcatt |
7120075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 226 - 276
Target Start/End: Complemental strand, 7120391 - 7120341
Alignment:
| Q |
226 |
ggaagtttaatttactgttgaaatgcaaaggtaaggtgcattctttgttaa |
276 |
Q |
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| T |
7120391 |
ggaagtttaatttacagttgaattgcaaaggtaatgtgcattctttgttaa |
7120341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0361 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0361
Description:
Target: scaffold0361; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 99 - 147
Target Start/End: Complemental strand, 8753 - 8705
Alignment:
| Q |
99 |
atgttgtaaggtgatggatttgttgatccgttagtggaaggatgttgtt |
147 |
Q |
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| T |
8753 |
atgttgtaaggtgatggatttgttgatccgttagtggaaggatgttgtt |
8705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 94 - 138
Target Start/End: Original strand, 50290996 - 50291040
Alignment:
| Q |
94 |
tgtatatgttgtaaggtgatggatttgttgatccgttagtggaag |
138 |
Q |
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| T |
50290996 |
tgtaaatgttgtaaggtgatggatttgttgatgtgttagaggaag |
50291040 |
T |
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