View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10751_high_21 (Length: 238)
Name: NF10751_high_21
Description: NF10751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10751_high_21 |
 | |
|
| [»] scaffold0011 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 97; Significance: 8e-48; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 29 - 129
Target Start/End: Original strand, 32209155 - 32209255
Alignment:
| Q |
29 |
caaacggcaagagctagtttcattattgtcacattattgactaactgaacaaaattaaggacaacaaacatgaagattatccaatctatcctcgcatgag |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32209155 |
caaacggcaagagctagtttcattattgtcacattattgactaactgaacaaaattaaggataacaaacatgaagattatccaatctatcctcgcatgag |
32209254 |
T |
|
| Q |
129 |
c |
129 |
Q |
| |
|
| |
|
|
| T |
32209255 |
c |
32209255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 29 - 152
Target Start/End: Original strand, 32211283 - 32211406
Alignment:
| Q |
29 |
caaacggcaagagctagtttcattattgtcacattattgactaactgaacaaaattaaggacaacaaacatgaagattatccaatctatcctcgcatgag |
128 |
Q |
| |
|
|||| ||||||||||||||||| | ||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
32211283 |
caaagggcaagagctagtttcaccaatgtcacattattgactagctgaacaaaattaacgacaacaaactcgaagattatccaatctatcctcgcatgag |
32211382 |
T |
|
| Q |
129 |
ctcagtatctatggcgtagcttct |
152 |
Q |
| |
|
||||||| || ||| | ||||||| |
|
|
| T |
32211383 |
ctcagtacctgtggtggagcttct |
32211406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 162 - 224
Target Start/End: Original strand, 32209255 - 32209317
Alignment:
| Q |
162 |
cgaacacgccaaggggtaccaagacactgaattgtctgtttctacgtgctggctcacgagttt |
224 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32209255 |
cgaacacgccaaggcgtaccaagacactgaattgtctgtttctacgtgctggctcacgagttt |
32209317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 59 - 152
Target Start/End: Complemental strand, 29844890 - 29844794
Alignment:
| Q |
59 |
acattattgactaactgaacaaaattaaggacaacaaacatgaagattatccaa---tctatcctcgcatgagctcagtatctatggcgtagcttct |
152 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||| |||| |||||||||| ||| | |||| || ||||| ||||||| |||||||| ||||||| |
|
|
| T |
29844890 |
acattattgactagctgaacataattaaggacaagaaacttgaagattattcaaatttgtatcatcccatgaactcagtacctatggcgcagcttct |
29844794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 108
Target Start/End: Original strand, 8709 - 8758
Alignment:
| Q |
59 |
acattattgactaactgaacaaaattaaggacaacaaacatgaagattat |
108 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||| |||| |||||||||| |
|
|
| T |
8709 |
acattattgactagctgaacataattaaggacaagaaacttgaagattat |
8758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 108
Target Start/End: Original strand, 50139038 - 50139087
Alignment:
| Q |
59 |
acattattgactaactgaacaaaattaaggacaacaaacatgaagattat |
108 |
Q |
| |
|
||||||||||||| || |||| |||||||||||| |||| |||||||||| |
|
|
| T |
50139038 |
acattattgactagctcaacataattaaggacaagaaacttgaagattat |
50139087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University