View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10751_high_26 (Length: 220)
Name: NF10751_high_26
Description: NF10751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10751_high_26 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
| [»] chr4 (3 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 202390 - 202609
Alignment:
| Q |
1 |
attttctgtcatgcaaatgacttttaccattttcccatccctgtttattgtgtgaggaaatctttgctcgagacatgttgtttttaatcttttcttttct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
202390 |
attttctgtcatgcaaatgacttttaccattttcccatccctgtttattgtgtgaggaaatctttgctcgagacatgttgtttttgatcttttcttttct |
202489 |
T |
|
| Q |
101 |
aagtattaagttttgctccaatacatttgatgatctttgtgataattgaaccttttacttgatgctgtgtgtaagagaatattatttagctgtttgatat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
202490 |
aagtattaagttttgctccaatacatttgatgatctttgtgatgattgaaccttttacttgatgctctgtgtaagagaatattatttagctgtttgatat |
202589 |
T |
|
| Q |
201 |
tgcttgtttttatggtatac |
220 |
Q |
| |
|
|||||||||| ||||||||| |
|
|
| T |
202590 |
tgcttgttttgatggtatac |
202609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 206710 - 206491
Alignment:
| Q |
1 |
attttctgtcatgcaaatgacttttaccattttcccatccctgtttattgtgtgaggaaatctttgctcgagacatgttgtttttaatcttttcttttct |
100 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
206710 |
attttctatcatgcaaatgacttttaccgttttcccatccctgtttattgtgtgaggaaatctttgcttgagacatgttgtttttgatcttttcttttcc |
206611 |
T |
|
| Q |
101 |
aagtattaagttttgctccaatacattt-gatgatctttgtgataattgaaccttttacttgatgctgtgtgtaagagaatattatttagctgtttgata |
199 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
206610 |
aagtattaagttttgctccaatacatttaaatgatctttgttataattgaaccttttacttgatggtgtgtgtaagagaatattatttagcagtttgata |
206511 |
T |
|
| Q |
200 |
ttgcttgtttttatggtata |
219 |
Q |
| |
|
|||| |||||| |||||||| |
|
|
| T |
206510 |
ttgcatgttttgatggtata |
206491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 6908596 - 6908378
Alignment:
| Q |
1 |
attttctgtcatgcaaatgacttttaccattttcccatccctgtttattgtgtgaggaaatctttgctcgagacatgttgtttttaatcttttcttttct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
6908596 |
attttctgtcatgcaaatgacttttaccattttcccatccctgtttattgtgtgaggaaatctttgctcaagacatgttgtttttgatcttttcttttct |
6908497 |
T |
|
| Q |
101 |
aagtattaagttttgctccaatacatttgatgatctttgtgataattgaaccttttacttgatgctgtgtgtaagagaatattatttagctgtttgatat |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6908496 |
aagtatta-gttttgctccaatacatttgatgatctttgtgataattgaactttttacttgatgctgtgtgtaagagaatattatttagctgtttgatat |
6908398 |
T |
|
| Q |
201 |
tgcttgtttttatggtatac |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
6908397 |
tgcttgtttttatggtatac |
6908378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 44924569 - 44924351
Alignment:
| Q |
1 |
attttctgtcatgcaaatgacttttaccattttcccatccctgtttattgtgtgaggaaatctttgctcgagacatgttgtttttaatcttttcttttct |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
44924569 |
attttctatcatgcaaatgacttttaccattttcc-atccctgtttattgtgtgaggaaatctttgctcgagacatgttgttttttatcctttcttttct |
44924471 |
T |
|
| Q |
101 |
aagtattaagttttgctccaatacatttgatgatctttgtgataattgaaccttttacttgatgctgtgtgtaagagaatattatttagctgtttgatat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
44924470 |
aagtattaagttttgctccaatacatttgatgatctttgtgataattgaaccttttacttgatgctgcgtgtaagagaatattatttagctgtttgatat |
44924371 |
T |
|
| Q |
201 |
tgcttgtttttatggtatac |
220 |
Q |
| |
|
||||| |||| ||||||||| |
|
|
| T |
44924370 |
tgcttattttgatggtatac |
44924351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 68 - 219
Target Start/End: Original strand, 6901694 - 6901846
Alignment:
| Q |
68 |
tcgagacatgttgtttttaatcttttcttttctaagtattaagttttgctccaatacatttga-tgatctttgtgataattgaaccttttacttgatgct |
166 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||| ||||| | |
|
|
| T |
6901694 |
tcgagacatgttgtttttgatcttttcttttccaagtattaagttttgctccaatacatttgaattatctttgttataattgaaccttttacctgatggt |
6901793 |
T |
|
| Q |
167 |
gtgtgtaagagaatattatttagctgtttgatattgcttgtttttatggtata |
219 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| |||||| |||||||| |
|
|
| T |
6901794 |
gtgtgtaagagaatattatttagcagtttgatattgcatgttttgatggtata |
6901846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 115; Significance: 1e-58; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 29514588 - 29514790
Alignment:
| Q |
1 |
attttctgtcatgcaaatgacttttaccattttcccatccctgtttattgtgtgaggaaatctttgctcgagacatgttgtttttaatcttttcttttct |
100 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||| |||| ||||||||||| ||| |||||||||||||||| ||||| ||||| | ||||||||||| |
|
|
| T |
29514588 |
attttctatcatgcatatgacttttaccattttcctatccttgtttattgtgcgagtaaatctttgctcgagagatgttctttttgagcttttcttttcc |
29514687 |
T |
|
| Q |
101 |
aagtattaagttttgctccaatacatttgatgatctttgtgataattgaaccttttacttgatgctgtgtgtaagagaatattatttagctgtttgatat |
200 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| || |||| ||| |||||||||||| ||||||| | |
|
|
| T |
29514688 |
aagtatagagttttgctccaatacatttgatgatctttatgataattgaaccttttacttaatggagtttgtatgagtatattatttagcagtttgattt |
29514787 |
T |
|
| Q |
201 |
tgc |
203 |
Q |
| |
|
||| |
|
|
| T |
29514788 |
tgc |
29514790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 43626290 - 43626417
Alignment:
| Q |
1 |
attttctgtcatgcaaatgacttttaccattttcc-catccctgtttattgtgtgaggaaatctttgctc-gagacatgttgtttttaatcttttctttt |
98 |
Q |
| |
|
||||||| | ||||| ||||||||||||||||| | ||||| |||||||||||| ||||||||||| ||| ||||| |||||||||| |||| ||||||| |
|
|
| T |
43626290 |
attttctatgatgcatatgacttttaccatttttctcatccttgtttattgtgtaaggaaatcttttctcagagacgtgttgttttttatctcttctttt |
43626389 |
T |
|
| Q |
99 |
ctaagtattaagttttgctccaatacat |
126 |
Q |
| |
|
| || ||||||||||||||||||||||| |
|
|
| T |
43626390 |
ccaaatattaagttttgctccaatacat |
43626417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 43997990 - 43997909
Alignment:
| Q |
1 |
attttctgtcatgcaaatgacttttaccattttcccatccctgtttattgtgtgaggaaatctttgctc-gagacatgttgt |
81 |
Q |
| |
|
||||||| | ||||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||| |||||| |
|
|
| T |
43997990 |
attttctatgatgcatatgacttttaccattttcccatccttgtttattgtgtgaggaaatcttttctcagagacgtgttgt |
43997909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 43632255 - 43632301
Alignment:
| Q |
130 |
atgatctttgtgataattgaaccttttacttgatgctgtgtgtaaga |
176 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
43632255 |
atgatctttgtgataattgaaccttttacttgatgttgtatgtaaga |
43632301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 24652906 - 24653035
Alignment:
| Q |
1 |
attttctgtcatgcaaatgacttttaccattttcccatccctgtttattgtgtgaggaaatctttgctcgagacatgttgtttttaatcttttcttttct |
100 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||| |
|
|
| T |
24652906 |
attttctatcatgcaaatgacttttaccgttttcccatccctgtttattgtgtgaggaaatctttgctcaaaacatgttgtttttgatcttttcttttcc |
24653005 |
T |
|
| Q |
101 |
aagtattaagttttgctccaatacatttga |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
24653006 |
aagtattaagttttgctccaatacatttga |
24653035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University