View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10751_high_5 (Length: 304)
Name: NF10751_high_5
Description: NF10751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10751_high_5 |
 | |
|
| [»] chr6 (4 HSPs) |
| |
|
| [»] scaffold0302 (2 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 285; Significance: 1e-160; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 1236845 - 1236541
Alignment:
| Q |
1 |
atcaattggtttaaaaggctcaaatgaatctgagtttaaggca-ttgtttttgcagtctagttgtcctttcagcagaaaatattggttgaaaggttatta |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1236845 |
atcaattggtttaaaaggctcaaatgaatctgagtttaaggcaattgtttttgcagtctagttgtcctttcagcagaaaatattggttgaaaggttatta |
1236746 |
T |
|
| Q |
100 |
gattagtacagaattggacattaaaatgcttaacattgggtggggcgtagtgatgggtgtccatttaatctgagattcttgagcaacaaaatgaaaaaac |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
1236745 |
gattagtacagaattggacattaaaatgcttaacattgggtggggcgtagtgatgggtgtccatttaatctgaaattcttgagcaacaaaatgaaaaaac |
1236646 |
T |
|
| Q |
200 |
atgtagagtttgatggatgtcggctttgttcatataaaaaaggaagccaatcaaatagctgacttgttaataaatgaaggatcacagatggatgacaatt |
299 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1236645 |
atgtagagtttgatggatgtgggctttgttcatataaaaaaggaagccaatcaaatagccgacttgttaataaatgaaggatcacagatggatgacaatt |
1236546 |
T |
|
| Q |
300 |
gaata |
304 |
Q |
| |
|
||||| |
|
|
| T |
1236545 |
gaata |
1236541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 1182910 - 1183149
Alignment:
| Q |
1 |
atcaattggtttaaaaggctcaaatgaatctgagtttaaggca-ttgtttttgcagtctagttgtcctttcagcagaaaatattggttgaaaggttatta |
99 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||||||| || |||||||||||||| ||||||||| |||||||||||||||||||||| | |
|
|
| T |
1182910 |
atcaattggtttaaaagactcaaacgaatctgagtttaaggcaattctttttgcagtctagcggtcctttcaaaagaaaatattggttgaaaggttgtag |
1183009 |
T |
|
| Q |
100 |
gattagtacagaattggacattaaaatgcttaacattgggtggggcgtagtgatgggtgtccatttaatctgagattcttgagcaacaaaatgaaaaaac |
199 |
Q |
| |
|
|| |||| |||||||||||| ||||||||| |||||||||||||||||| |||| | |||||||||||||||||||||||||| |
|
|
| T |
1183010 |
gagaagtatagaattggacat---------------tgggtggggtgtagtgatgggtgtccatgtaatataagattcttgagcaacaaaatgaaaaa-- |
1183092 |
T |
|
| Q |
200 |
atgtagagtttgatggatgtcggctttgttcatataaaaaaggaagccaatcaaata |
256 |
Q |
| |
|
||| |||||||| ||||| | ||||||||||||||||| | |||||| ||||||||| |
|
|
| T |
1183093 |
atgcagagtttggtggatatgggctttgttcatataaatagggaagctaatcaaata |
1183149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 6 - 134
Target Start/End: Original strand, 897601 - 897730
Alignment:
| Q |
6 |
ttggtttaaaaggctcaaatgaatctgagtttaaggca-ttgtttttgcagtctagttgtcctttcagcagaaaatattggttgaaaggttattagatta |
104 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||| || ||||||||||||| ||||| |||||||| ||||||||||||||||||||||| | |||| | |
|
|
| T |
897601 |
ttggtttaaaagactcaaataaatctgagtttaagacaattgtttttgcagtttagttttcctttcaacagaaaatattggttgaaaggttgtaagataa |
897700 |
T |
|
| Q |
105 |
gtacagaattggacattaaaatgcttaaca |
134 |
Q |
| |
|
||| |||||||||||| ||||||||||||| |
|
|
| T |
897701 |
gtatagaattggacatgaaaatgcttaaca |
897730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 1193843 - 1193956
Alignment:
| Q |
1 |
atcaattggtttaaaaggctcaaatgaatctgagtttaaggc-attgtttttgcagtctagttgtcctttcagcagaaaatattggttgaaaggttatta |
99 |
Q |
| |
|
||||||||| ||||||| || |||||||||| | |||||||| |||||||||||||| || |||||| |||| ||||||||||||||||||||||| | | |
|
|
| T |
1193843 |
atcaattgggttaaaagactaaaatgaatcttaatttaaggctattgtttttgcagtttaattgtccattcaacagaaaatattggttgaaaggttgtaa |
1193942 |
T |
|
| Q |
100 |
gattagtacagaat |
113 |
Q |
| |
|
||| |||| ||||| |
|
|
| T |
1193943 |
gataagtatagaat |
1193956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0302 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: scaffold0302
Description:
Target: scaffold0302; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 135 - 273
Target Start/End: Original strand, 20191 - 20329
Alignment:
| Q |
135 |
ttgggtggggcgtagtgatgggtgtccatttaatctgagattcttgagcaacaaaatgaaaaaacatgtagagtttgatggatgtcggctttgttcatat |
234 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| | ||||||| || | |
|
|
| T |
20191 |
ttgggtggggtgtagtgatgggtgttcatttaatctgagattcttgagcaacaaaatgtaaaaacatgcagagtttgatggatgtggtctttgttaattt |
20290 |
T |
|
| Q |
235 |
aaaaaaggaagccaatcaaatagctgacttgttaataaa |
273 |
Q |
| |
|
||| |||||||| ||||||||| | |||| |||| |||| |
|
|
| T |
20291 |
aaacaaggaagctaatcaaataaccgactcgttagtaaa |
20329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0302; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 20090 - 20184
Alignment:
| Q |
1 |
atcaattggtttaaaaggctcaaatgaatctgagtttaaggc-attgtttttgcagtctagttgtcctttcagcagaaaatattggttgaaaggtt |
95 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||| | ||||||||||||||||||| |
|
|
| T |
20090 |
atcaattggtttaaaagactcaaatgaatctgagtttaaggcaattgtttttgcagtctagttttcctttca-aaataaatattggttgaaaggtt |
20184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University