View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10751_low_11 (Length: 300)
Name: NF10751_low_11
Description: NF10751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10751_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 239458 - 239175
Alignment:
| Q |
1 |
agaaaacatacagaaagtgctctcatatattttcccatctacacttggattggattaatttgaagcagcaatgatcaaagtgtggaatgaaagaatagaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
239458 |
agaaaacatacagaaagtgctctcatatattttcccatcgatacttggattggattaatttgaagcagcaatgatcaaagtgtggaatgaaagaatagaa |
239359 |
T |
|
| Q |
101 |
acttaagcattaagaacgttttaattcaaagtcgcagtctagattccgatttgtggttaagggtaaggccatgagaaaacacaactacacaagtgtaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
239358 |
acttaagcattaagaacgttttaattcaaagtcgcagtctagattccgatttgtggctaagggtaaggccatgagaaaacacaactacacaagtgtaatt |
239259 |
T |
|
| Q |
201 |
ttgagaaaaaagtttatatatataagaaagggaagtagcacatgactttaactaccatttaaacaaaaaggagcatgcatgaac |
284 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
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| T |
239258 |
ttgagaaaaaagtttatatatataagaaagggaagtagcacctgactttaactaccatttaaacaaaaagaagcatgcatgaac |
239175 |
T |
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