View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10751_low_12 (Length: 285)

Name: NF10751_low_12
Description: NF10751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10751_low_12
NF10751_low_12
[»] chr8 (21 HSPs)
chr8 (1-268)||(1213831-1214098)
chr8 (128-240)||(6197848-6197960)
chr8 (128-240)||(27939013-27939125)
chr8 (134-239)||(11322590-11322694)
chr8 (137-217)||(11322591-11322671)
chr8 (135-245)||(6197827-6197937)
chr8 (141-246)||(27976761-27976866)
chr8 (141-246)||(28034030-28034135)
chr8 (188-240)||(43140552-43140604)
chr8 (132-245)||(14381264-14381377)
chr8 (128-224)||(1213958-1214054)
chr8 (152-236)||(28205808-28205892)
chr8 (138-184)||(2805875-2805921)
chr8 (191-233)||(20694432-20694474)
chr8 (145-215)||(40737854-40737923)
chr8 (188-245)||(13325173-13325230)
chr8 (196-240)||(24052918-24052962)
chr8 (136-184)||(27966377-27966425)
chr8 (136-200)||(27976772-27976836)
chr8 (136-200)||(28034041-28034105)
chr8 (139-239)||(36058778-36058878)
[»] chr4 (25 HSPs)
chr4 (132-245)||(22720532-22720645)
chr4 (128-245)||(22720507-22720624)
chr4 (128-245)||(22768166-22768283)
chr4 (134-237)||(41622106-41622209)
chr4 (134-245)||(52673599-52673710)
chr4 (135-240)||(52673627-52673732)
chr4 (138-237)||(15794796-15794896)
chr4 (188-245)||(2198049-2198106)
chr4 (188-245)||(22923660-22923717)
chr4 (188-245)||(22928313-22928370)
chr4 (188-245)||(22984592-22984649)
chr4 (188-245)||(22998180-22998237)
chr4 (134-254)||(22768136-22768256)
chr4 (137-213)||(21861082-21861157)
chr4 (137-213)||(21916945-21917020)
chr4 (135-217)||(20291811-20291893)
chr4 (134-204)||(26066415-26066485)
chr4 (188-241)||(1122188-1122241)
chr4 (128-165)||(2198070-2198107)
chr4 (128-164)||(2198118-2198154)
chr4 (147-215)||(10554929-10554997)
chr4 (135-171)||(20783718-20783754)
chr4 (188-240)||(35884358-35884410)
chr4 (188-240)||(35884411-35884463)
chr4 (132-180)||(52817633-52817681)
[»] chr6 (18 HSPs)
chr6 (128-245)||(7632792-7632909)
chr6 (128-245)||(26388213-26388330)
chr6 (128-239)||(14589565-14589676)
chr6 (128-235)||(26388202-26388309)
chr6 (128-238)||(33123033-33123143)
chr6 (128-239)||(14623223-14623334)
chr6 (128-238)||(3989532-3989642)
chr6 (128-239)||(29938623-29938733)
chr6 (135-217)||(1158278-1158360)
chr6 (132-245)||(17773527-17773640)
chr6 (128-180)||(14093103-14093155)
chr6 (134-225)||(29938644-29938734)
chr6 (152-205)||(2284821-2284874)
chr6 (188-241)||(33123016-33123069)
chr6 (135-240)||(14589549-14589654)
chr6 (135-240)||(17773507-17773612)
chr6 (195-240)||(30629597-30629642)
chr6 (135-239)||(7632777-7632881)
[»] chr5 (16 HSPs)
chr5 (135-246)||(21032532-21032643)
chr5 (128-235)||(21032554-21032661)
chr5 (135-240)||(42364249-42364354)
chr5 (137-245)||(5240227-5240335)
chr5 (188-245)||(26221025-26221082)
chr5 (188-249)||(42364217-42364278)
chr5 (135-239)||(29486505-29486609)
chr5 (135-238)||(26221053-26221156)
chr5 (137-215)||(32522559-32522637)
chr5 (188-240)||(6834036-6834088)
chr5 (135-167)||(19522547-19522579)
chr5 (138-239)||(694238-694339)
chr5 (170-239)||(7604195-7604264)
chr5 (173-246)||(8309855-8309928)
chr5 (188-217)||(28499864-28499893)
chr5 (135-171)||(7065660-7065696)
[»] chr3 (12 HSPs)
chr3 (128-245)||(50334943-50335059)
chr3 (135-237)||(29497369-29497471)
chr3 (134-215)||(53711889-53711970)
chr3 (138-217)||(35239682-35239761)
chr3 (187-235)||(36344517-36344565)
chr3 (135-217)||(28406500-28406582)
chr3 (137-217)||(48593175-48593255)
chr3 (134-209)||(32186917-32186992)
chr3 (188-235)||(50334932-50334979)
chr3 (135-204)||(21150171-21150239)
chr3 (137-235)||(48748536-48748636)
chr3 (132-180)||(42449131-42449179)
[»] chr7 (11 HSPs)
chr7 (128-240)||(38646188-38646301)
chr7 (137-240)||(4132418-4132521)
chr7 (188-240)||(43250421-43250473)
chr7 (157-245)||(2363076-2363163)
chr7 (188-240)||(26982770-26982822)
chr7 (188-245)||(21857070-21857127)
chr7 (197-240)||(43250375-43250418)
chr7 (191-237)||(38646175-38646221)
chr7 (135-237)||(41115579-41115681)
chr7 (188-238)||(48445972-48446022)
chr7 (188-240)||(21857168-21857220)
[»] chr1 (14 HSPs)
chr1 (128-241)||(8352157-8352270)
chr1 (188-233)||(30800291-30800336)
chr1 (162-240)||(30800185-30800263)
chr1 (134-217)||(26468322-26468405)
chr1 (135-235)||(14773734-14773834)
chr1 (188-240)||(26468300-26468352)
chr1 (135-218)||(8900823-8900906)
chr1 (137-215)||(897042-897120)
chr1 (135-180)||(15439928-15439973)
chr1 (128-217)||(31635767-31635856)
chr1 (206-246)||(4602644-4602684)
chr1 (132-180)||(5856423-5856471)
chr1 (188-240)||(8352141-8352193)
chr1 (177-233)||(15497495-15497551)
[»] chr2 (12 HSPs)
chr2 (145-246)||(8996792-8996893)
chr2 (128-204)||(8996795-8996871)
chr2 (202-245)||(20504244-20504287)
chr2 (137-212)||(25903722-25903797)
chr2 (137-215)||(8717540-8717618)
chr2 (147-205)||(30429110-30429167)
chr2 (147-204)||(41221671-41221727)
chr2 (188-240)||(10495726-10495778)
chr2 (174-245)||(20218614-20218685)
chr2 (135-167)||(29168579-29168611)
chr2 (147-215)||(39792136-39792204)
chr2 (132-180)||(43426654-43426702)
[»] scaffold0113 (1 HSPs)
scaffold0113 (161-240)||(40459-40538)


Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 1213831 - 1214098
Alignment:
Q  1 ctggatgacaaatttgaagtttattgttgcttttggattttgaatccctaatagttttggagtattggttgtgcgctaaatgaaagcaacacttgttcat 100  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1213831 ctggattacaaatttgaagtttattggtgcttttggattttgaatccctaatagttttggagtattggttgtgcgctaaatgaaagcaacacttgttcat 1213930  T
Q  101 ctcttttgttgctttgtgatttactacaaactccactttttaaatacattcaataattaatgtatctgatctttattatagaccgggtacattaattatt 200  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||    
T  1213931 ctcttttgttgctttgtgacttactccaaactccactttttaaatacattcaataattaatttacctgatctttattatagatcgggtacattaattatt 1214030  T
Q  201 caatatatctaaaaagtagagttttgtttataatagtgacaggagatagcatatggtaaacacttgtt 268  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  1214031 caatatatctaaaaagtagagttttatttataatagtaacaggagatagcatatggtaaacacttgtt 1214098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 128 - 240
Target Start/End: Original strand, 6197848 - 6197960
Alignment:
Q  128 aaactccactttttaaatacattcaataattaatgtatctgatctttattatagaccgggtacattaattattcaatatatctaaaaagtagagttttgt 227  Q
    ||||||||||||||| ||||||| |||| |||||||||||  ||||||| |||||     ||||||||||||| ||| ||||||||||||| |||||||     
T  6197848 aaactccactttttagatacattaaatagttaatgtatctagtctttatcatagattaaatacattaattatttaatgtatctaaaaagtaaagttttgc 6197947  T
Q  228 ttataatagtgac 240  Q
    |||||||||||||    
T  6197948 ttataatagtgac 6197960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 128 - 240
Target Start/End: Original strand, 27939013 - 27939125
Alignment:
Q  128 aaactccactttttaaatacattcaataattaatgtatctgatctttattatagaccgggtacattaattattcaatatatctaaaaagtagagttttgt 227  Q
    |||||||||||| ||| | |||| |||||| |||||||||  |||||||||||||| ||||||||| |||||||||| |||||||||| || | ||||      
T  27939013 aaactccactttataagtgcattgaataatcaatgtatctagtctttattatagactgggtacattcattattcaatgtatctaaaaaataaaattttac 27939112  T
Q  228 ttataatagtgac 240  Q
    | |||||||||||    
T  27939113 tcataatagtgac 27939125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 134 - 239
Target Start/End: Original strand, 11322590 - 11322694
Alignment:
Q  134 cactttttaaatacattcaataattaatgtatctgatctttattatagaccgggtacattaattattcaatatatctaaaaagtagagttttgtttataa 233  Q
    ||||||||| || |||| ||||||||||||||| ||||| || || |||  || || ||||||||||||||||||||||||| | |||||||| ||||||    
T  11322590 cactttttagatgcattgaataattaatgtatccgatctataataaagattggatatattaattattcaatatatctaaaaa-ttgagttttgcttataa 11322688  T
Q  234 tagtga 239  Q
    ||||||    
T  11322689 tagtga 11322694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 137 - 217
Target Start/End: Complemental strand, 11322671 - 11322591
Alignment:
Q  137 tttttaaatacattcaataattaatgtatctgatctttattatagaccgggtacattaattattcaatatatctaaaaagt 217  Q
    |||||| ||| ||| |||||||||| ||||  |||||||||||||| ||| |||||||||||||||||  |||||||||||    
T  11322671 tttttagatatattgaataattaatatatccaatctttattatagatcggatacattaattattcaatgcatctaaaaagt 11322591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 245
Target Start/End: Complemental strand, 6197937 - 6197827
Alignment:
Q  135 actttttaaatacattcaataattaatgtatctgatctttattatagaccgggtacattaattattcaatatatctaaaaagtagagttttgtttataat 234  Q
    |||||||| ||||||| |||||||||||||| | |||| |  || ||||  | |||||||| |||| ||| |||||||||||| |||||||| |||||||    
T  6197937 actttttagatacattaaataattaatgtatttaatctatgataaagactagatacattaactatttaatgtatctaaaaagtggagttttgcttataat 6197838  T
Q  235 agtgacaggag 245  Q
    | |||| ||||    
T  6197837 aatgaccggag 6197827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 246
Target Start/End: Original strand, 27976761 - 27976866
Alignment:
Q  141 taaatacattcaataattaatgtatctgatctttattatagaccgggtacattaattattcaatatatctaaaaagtagagttttgtttataatagtgac 240  Q
    ||||| |||| ||||||||||| ||||| ||| || | |||||| | |||||||||||||||||  ||||||||||   | ||||| |||||||||||||    
T  27976761 taaattcattaaataattaatgcatctggtctataatgtagaccagatacattaattattcaatgaatctaaaaagatcatttttgcttataatagtgac 27976860  T
Q  241 aggaga 246  Q
    | ||||    
T  27976861 aagaga 27976866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 246
Target Start/End: Original strand, 28034030 - 28034135
Alignment:
Q  141 taaatacattcaataattaatgtatctgatctttattatagaccgggtacattaattattcaatatatctaaaaagtagagttttgtttataatagtgac 240  Q
    ||||| |||| ||||||||||| ||||| ||| || | |||||| | |||||||||||||||||  ||||||||||   | ||||| |||||||||||||    
T  28034030 taaattcattaaataattaatgcatctggtctataatgtagaccagatacattaattattcaatgaatctaaaaagatcatttttgcttataatagtgac 28034129  T
Q  241 aggaga 246  Q
    | ||||    
T  28034130 aagaga 28034135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 43140604 - 43140552
Alignment:
Q  188 tacattaattattcaatatatctaaaaagtagagttttgtttataatagtgac 240  Q
    ||||||||||||||||| ||||||| |||||  ||||||||||||||||||||    
T  43140604 tacattaattattcaatgtatctaataagtaatgttttgtttataatagtgac 43140552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 245
Target Start/End: Original strand, 14381264 - 14381377
Alignment:
Q  132 tccactttttaaatacattcaataattaatgtatctgatctttattatagaccgggtacattaattattcaatatatctaaaaagtagagttttgtttat 231  Q
    ||||||||||| ||||||||||| | | |||||| || ||||||||||| | |   ||||| | | ||| ||| |||||||||||| || ||||||||||    
T  14381264 tccactttttagatacattcaattaatgatgtatgtggtctttattatatatcacatacatcattaattgaatgtatctaaaaagtggatttttgtttat 14381363  T
Q  232 aatagtgacaggag 245  Q
    | ||||||| ||||    
T  14381364 attagtgaccggag 14381377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 224
Target Start/End: Complemental strand, 1214054 - 1213958
Alignment:
Q  128 aaactccactttttaaatacattcaataattaatgtatctgatctttattatagaccgggtacattaattattcaatatatctaaaaagtagagttt 224  Q
    |||||| |||||||| ||| ||| ||||||||||||| | ||||| || || ||| | |||| |||||||||| ||| ||| |||||||| ||||||    
T  1214054 aaactctactttttagatatattgaataattaatgtacccgatctataataaagatcaggtaaattaattattgaatgtatttaaaaagtggagttt 1213958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 236
Target Start/End: Complemental strand, 28205892 - 28205808
Alignment:
Q  152 aataattaatgtatctgatctttattatagaccgggtacattaattattcaatatatctaaaaagtagagttttgtttataatag 236  Q
    ||||||||||||||||  ||||| |||| |||  | ||||||||||||||||| ||||| |||| |  | |||||||||||||||    
T  28205892 aataattaatgtatctagtctttgttatggacatgatacattaattattcaatgtatctgaaaaattaaattttgtttataatag 28205808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 184
Target Start/End: Complemental strand, 2805921 - 2805875
Alignment:
Q  138 ttttaaatacattcaataattaatgtatctgatctttattatagacc 184  Q
    |||||||| |||||||| | |||||||| ||||||||||||||||||    
T  2805921 ttttaaattcattcaattaataatgtatatgatctttattatagacc 2805875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 233
Target Start/End: Complemental strand, 20694474 - 20694432
Alignment:
Q  191 attaattattcaatatatctaaaaagtagagttttgtttataa 233  Q
    |||||||||||||| |||||||||||| || ||||||||||||    
T  20694474 attaattattcaatgtatctaaaaagttgatttttgtttataa 20694432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 215
Target Start/End: Complemental strand, 40737923 - 40737854
Alignment:
Q  145 tacattcaataattaatgtatctgatctttattatagaccgggtacattaattattcaatatatctaaaaa 215  Q
    |||||| |||||||||||||||||| ||| | | | |||||| ||||||||||||||||| |||| |||||    
T  40737923 tacattgaataattaatgtatctgaccttaaatgt-gaccggatacattaattattcaatgtatcaaaaaa 40737854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 245
Target Start/End: Original strand, 13325173 - 13325230
Alignment:
Q  188 tacattaattattcaatatatctaaaaagtagagttttgtttataatagtgacaggag 245  Q
    |||||| ||||||||||||| |||||||||  ||||||  |||||||| |||||||||    
T  13325173 tacattgattattcaatatacctaaaaagtgaagttttccttataataatgacaggag 13325230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 24052918 - 24052962
Alignment:
Q  196 ttattcaatatatctaaaaagtagagttttgtttataatagtgac 240  Q
    |||||||||  | |||||||||||| |||||||||||||||||||    
T  24052918 ttattcaatgaacctaaaaagtagatttttgtttataatagtgac 24052962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 27966425 - 27966377
Alignment:
Q  136 ctttttaaatacattcaataattaatgtatctgatctttattatagacc 184  Q
    |||||||||| | || |||||||||||||||||||||  ||||||||||    
T  27966425 ctttttaaattcgttgaataattaatgtatctgatctacattatagacc 27966377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 200
Target Start/End: Complemental strand, 27976836 - 27976772
Alignment:
Q  136 ctttttaaatacattcaataattaatgtatctgatctttattatagaccgggtacattaattatt 200  Q
    ||||||| || |||| ||||||||||||||||| |||  |||||||||| | | |||||||||||    
T  27976836 ctttttagattcattgaataattaatgtatctggtctacattatagaccagatgcattaattatt 27976772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 200
Target Start/End: Complemental strand, 28034105 - 28034041
Alignment:
Q  136 ctttttaaatacattcaataattaatgtatctgatctttattatagaccgggtacattaattatt 200  Q
    ||||||| || |||| ||||||||||||||||| |||  |||||||||| | | |||||||||||    
T  28034105 ctttttagattcattgaataattaatgtatctggtctacattatagaccagatgcattaattatt 28034041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 239
Target Start/End: Complemental strand, 36058878 - 36058778
Alignment:
Q  139 tttaaatacattcaataattaatgtatctgatctttattatagaccgggtacattaattattcaatatatctaaaaagtagagttttgtttataatagtg 238  Q
    |||||||  ||||||| | |||||||| |||||||||||||||| |   ||| ||| ||| | |||| |||||||| ||  | |||||||||||||||||    
T  36058878 tttaaatttattcaattaataatgtatttgatctttattatagatcacatactttatttaataaataaatctaaaatgttaaattttgtttataatagtg 36058779  T
Q  239 a 239  Q
    |    
T  36058778 a 36058778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 132 - 245
Target Start/End: Original strand, 22720532 - 22720645
Alignment:
Q  132 tccactttttaaatacattcaataattaatgtatctgatctttattatagaccgggtacattaattattcaatatatctaaaaagtagagttttgtttat 231  Q
    ||||||||||| ||||||| ||||||||||||||||  |||||||||||||| |  ||||||||||||||||| |||||||||||| |||||||| ||||    
T  22720532 tccactttttagatacattgaataattaatgtatctagtctttattatagactgcatacattaattattcaatgtatctaaaaagtggagttttgcttat 22720631  T
Q  232 aatagtgacaggag 245  Q
    ||||||||| ||||    
T  22720632 aatagtgaccggag 22720645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 128 - 245
Target Start/End: Complemental strand, 22720624 - 22720507
Alignment:
Q  128 aaactccactttttaaatacattcaataattaatgtatctgatctttattatagaccgggtacattaattattcaatatatctaaaaagtagagttttgt 227  Q
    ||||||||||||||| ||||||| ||||||||||||||    ||| || || ||||  | ||||||||||||||||| |||||||||||| || ||||||    
T  22720624 aaactccactttttagatacattgaataattaatgtatgcagtctataataaagactagatacattaattattcaatgtatctaaaaagtggaattttgt 22720525  T
Q  228 ttataatagtgacaggag 245  Q
    ||||||||||||| ||||    
T  22720524 ttataatagtgacgggag 22720507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 128 - 245
Target Start/End: Original strand, 22768166 - 22768283
Alignment:
Q  128 aaactccactttttaaatacattcaataattaatgtatctgatctttattatagaccgggtacattaattattcaatatatctaaaaagtagagttttgt 227  Q
    ||||||||  ||||| ||||||| ||||||||||||||||  |||||||||||||| |  | ||||||||||||||| ||||||||||||  ||| ||||    
T  22768166 aaactccatattttagatacattgaataattaatgtatctagtctttattatagactgcattcattaattattcaatgtatctaaaaagtgtagtgttgt 22768265  T
Q  228 ttataatagtgacaggag 245  Q
    ||||| ||||||| ||||    
T  22768266 ttatagtagtgaccggag 22768283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 134 - 237
Target Start/End: Complemental strand, 41622209 - 41622106
Alignment:
Q  134 cactttttaaatacattcaataattaatgtatctgatctttattatagaccgggtacattaattattcaatatatctaaaaagtagagttttgtttataa 233  Q
    ||||||||| ||||||| ||| ||||||||||||  ||||||||||||||   ||||| |||||||||||| |||||||||| |||| ||||  ||||||    
T  41622209 cactttttagatacattgaatgattaatgtatctagtctttattatagactacgtacactaattattcaatgtatctaaaaaatagatttttacttataa 41622110  T
Q  234 tagt 237  Q
    ||||    
T  41622109 tagt 41622106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 134 - 245
Target Start/End: Complemental strand, 52673710 - 52673599
Alignment:
Q  134 cactttttaaatacattcaataattaatgtatctgatctttattatagaccgggtacattaattattcaatatatctaaaaagtagagttttgtttataa 233  Q
    ||||||||| ||||||| |||||||||||||||    || || || | ||  | ||||||||||||||||||||||||||||||| ||||||| ||||||    
T  52673710 cactttttagatacattgaataattaatgtatccatactataataaaaactagatacattaattattcaatatatctaaaaagtaaagttttgcttataa 52673611  T
Q  234 tagtgacaggag 245  Q
    ||||||| ||||    
T  52673610 tagtgacgggag 52673599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 135 - 240
Target Start/End: Original strand, 52673627 - 52673732
Alignment:
Q  135 actttttaaatacattcaataattaatgtatctgatctttattatagaccgggtacattaattattcaatatatctaaaaagtagagttttgtttataat 234  Q
    |||||||| ||| ||| ||||||||||||||||  | ||||||||||   || ||||||||||||||||| ||||||||||||  | ||||| |||||||    
T  52673627 actttttagatatattgaataattaatgtatctagtttttattatagtatggatacattaattattcaatgtatctaaaaagtgaaattttgcttataat 52673726  T
Q  235 agtgac 240  Q
    ||||||    
T  52673727 agtgac 52673732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 138 - 237
Target Start/End: Original strand, 15794796 - 15794896
Alignment:
Q  138 ttttaaatacattcaataattaatgtatctgatctttattatagaccgggtacattaattattcaatata-tctaaaaagtagagttttgtttataatag 236  Q
    ||||| ||||||| ||||||||||||||||| ||||||||||||||    |||||||||| ||||||||| || ||||| || | |||||||||||||||    
T  15794796 ttttagatacattgaataattaatgtatctggtctttattatagactaaatacattaattcttcaatatattcaaaaaaataaaattttgtttataatag 15794895  T
Q  237 t 237  Q
    |    
T  15794896 t 15794896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 188 - 245
Target Start/End: Complemental strand, 2198106 - 2198049
Alignment:
Q  188 tacattaattattcaatatatctaaaaagtagagttttgtttataatagtgacaggag 245  Q
    ||||||||||||||||| |||||||||||| |||||||| ||||||||||||| ||||    
T  2198106 tacattaattattcaatgtatctaaaaagtggagttttgcttataatagtgaccggag 2198049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 245
Target Start/End: Complemental strand, 22923717 - 22923660
Alignment:
Q  188 tacattaattattcaatatatctaaaaagtagagttttgtttataatagtgacaggag 245  Q
    ||||||||||||||||| |||||||||| | |||||||| ||||||||||||| ||||    
T  22923717 tacattaattattcaatgtatctaaaaattggagttttgcttataatagtgaccggag 22923660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 245
Target Start/End: Complemental strand, 22928370 - 22928313
Alignment:
Q  188 tacattaattattcaatatatctaaaaagtagagttttgtttataatagtgacaggag 245  Q
    ||||||||||||||||| |||||||||| | |||||||| ||||||||||||| ||||    
T  22928370 tacattaattattcaatgtatctaaaaattggagttttgcttataatagtgaccggag 22928313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 245
Target Start/End: Complemental strand, 22984649 - 22984592
Alignment:
Q  188 tacattaattattcaatatatctaaaaagtagagttttgtttataatagtgacaggag 245  Q
    ||||||||||||||||| |||||||||| | |||||||| ||||||||||||| ||||    
T  22984649 tacattaattattcaatgtatctaaaaattggagttttgcttataatagtgaccggag 22984592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 245
Target Start/End: Complemental strand, 22998237 - 22998180
Alignment:
Q  188 tacattaattattcaatatatctaaaaagtagagttttgtttataatagtgacaggag 245  Q
    ||||||||||||||||| |||||||||| | |||||||| ||||||||||||| ||||    
T  22998237 tacattaattattcaatgtatctaaaaattggagttttgcttataatagtgaccggag 22998180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 134 - 254
Target Start/End: Complemental strand, 22768256 - 22768136
Alignment:
Q  134 cactttttaaatacattcaataattaatgtatctgatctttattatagaccgggtacattaattattcaatatatctaaaaagtagagttttgtttataa 233  Q
    ||||||||| ||||||| ||||||||||| ||    ||| || || ||||  | ||||||||||||||||| |||||||||  | |||||||| ||||||    
T  22768256 cactttttagatacattgaataattaatgaatgcagtctataataaagactagatacattaattattcaatgtatctaaaatatggagttttgcttataa 22768157  T
Q  234 tagtgacaggagatagcatat 254  Q
    ||||||| ||||  |||||||    
T  22768156 tagtgaccggagggagcatat 22768136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 213
Target Start/End: Original strand, 21861082 - 21861157
Alignment:
Q  137 tttttaaatacattcaataattaatgtatctgatctttattatagaccgggtacattaattattcaatatatctaaa 213  Q
    |||||| ||||||| |||||||||||||||||| ||||  |||||||| | ||||||||||||| |||  |||||||    
T  21861082 tttttagatacattgaataattaatgtatctga-cttttatatagaccagatacattaattatttaatgaatctaaa 21861157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 213
Target Start/End: Original strand, 21916945 - 21917020
Alignment:
Q  137 tttttaaatacattcaataattaatgtatctgatctttattatagaccgggtacattaattattcaatatatctaaa 213  Q
    |||||| ||||||| |||||||||||||||||| ||||  |||||||| | ||||||||||||| |||  |||||||    
T  21916945 tttttagatacattgaataattaatgtatctga-cttttatatagaccagatacattaattatttaatgaatctaaa 21917020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 217
Target Start/End: Original strand, 20291811 - 20291893
Alignment:
Q  135 actttttaaatacattcaataattaatgtatctgatctttattatagaccgggtacattaattattcaatatatctaaaaagt 217  Q
    ||||||||| || ||| ||||| ||||||||||||||| || |   ||| || ||||||| |||||||||| |||||||||||    
T  20291811 actttttaagtatattaaataactaatgtatctgatctataattacgactggatacattagttattcaataaatctaaaaagt 20291893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 204
Target Start/End: Complemental strand, 26066485 - 26066415
Alignment:
Q  134 cactttttaaatacattcaataattaatgtatctgatctttattatagaccgggtacattaattattcaat 204  Q
    ||||||||| || |||| ||||| | ||||||||| ||| |||| |||||||| ||||| |||||||||||    
T  26066485 cactttttagattcattaaataactgatgtatctggtctatattctagaccggatacatcaattattcaat 26066415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 1122241 - 1122188
Alignment:
Q  188 tacattaattattcaatatatctaaaaagtagagttttgtttataatagtgaca 241  Q
    ||||||| || ||||||| ||||||||| |||| ||||||| ||||||||||||    
T  1122241 tacattagttgttcaatagatctaaaaaatagatttttgttcataatagtgaca 1122188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 165
Target Start/End: Original strand, 2198070 - 2198107
Alignment:
Q  128 aaactccactttttaaatacattcaataattaatgtat 165  Q
    ||||||||||||||| ||||||| ||||||||||||||    
T  2198070 aaactccactttttagatacattgaataattaatgtat 2198107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 164
Target Start/End: Complemental strand, 2198154 - 2198118
Alignment:
Q  128 aaactccactttttaaatacattcaataattaatgta 164  Q
    ||||| ||||||||||||||||| |||||||||||||    
T  2198154 aaacttcactttttaaatacattgaataattaatgta 2198118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 215
Target Start/End: Complemental strand, 10554997 - 10554929
Alignment:
Q  147 cattcaataattaatgtatctgatctttattatagaccgggtacattaattattcaatatatctaaaaa 215  Q
    |||| ||||||||||||||||| |||| ||| || |   | |||||||||||||||||| |||||||||    
T  10554997 cattgaataattaatgtatctggtcttcattgtaaagtagatacattaattattcaataaatctaaaaa 10554929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 20783718 - 20783754
Alignment:
Q  135 actttttaaatacattcaataattaatgtatctgatc 171  Q
    ||||||||| |||||| ||||||||||||||||||||    
T  20783718 actttttaagtacattgaataattaatgtatctgatc 20783754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 35884410 - 35884358
Alignment:
Q  188 tacattaattattcaatatatctaaaaagtagagttttgtttataatagtgac 240  Q
    |||||| |||||||||| ||||||||||||  |  ||||||||||||||||||    
T  35884410 tacattgattattcaatgtatctaaaaagtcaaagtttgtttataatagtgac 35884358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 35884411 - 35884463
Alignment:
Q  188 tacattaattattcaatatatctaaaaagtagagttttgtttataatagtgac 240  Q
    |||||| |||||||||| ||||||||||||  |  ||||||||||||||||||    
T  35884411 tacattgattattcaatgtatctaaaaagtcaaagtttgtttataatagtgac 35884463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 180
Target Start/End: Complemental strand, 52817681 - 52817633
Alignment:
Q  132 tccactttttaaatacattcaataattaatgtatctgatctttattata 180  Q
    ||||||||||| ||||||||||| | | |||||| ||||||||||||||    
T  52817681 tccactttttagatacattcaattaatgatgtatgtgatctttattata 52817633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 128 - 245
Target Start/End: Original strand, 7632792 - 7632909
Alignment:
Q  128 aaactccactttttaaatacattcaataattaatgtatctgatctttattatagaccgggtacattaattattcaatatatctaaaaagtagagttttgt 227  Q
    ||||| |||||| ||| ||||||||||||| |||||||||  ||||||||||||||||| ||||||||||||||| | ||||||||||||  ||||||||    
T  7632792 aaacttcactttctaactacattcaataatcaatgtatctagtctttattatagaccggatacattaattattcagtgtatctaaaaagttaagttttgt 7632891  T
Q  228 ttataatagtgacaggag 245  Q
    |||||||| |||| ||||    
T  7632892 ttataataatgaccggag 7632909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 128 - 245
Target Start/End: Original strand, 26388213 - 26388330
Alignment:
Q  128 aaactccactttttaaatacattcaataattaatgtatctgatctttattatagaccgggtacattaattattcaatatatctaaaaagtagagttttgt 227  Q
    |||||| |||||||| ||| ||| |||||||||||||||| ||||||||||||||| |  ||||||||||||||||||||| |||||||| |||||||      
T  26388213 aaactctactttttagatatattgaataattaatgtatctaatctttattatagactgaatacattaattattcaatatatataaaaagtggagtttttc 26388312  T
Q  228 ttataatagtgacaggag 245  Q
    ||||||||||||| ||||    
T  26388313 ttataatagtgaccggag 26388330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 128 - 239
Target Start/End: Original strand, 14589565 - 14589676
Alignment:
Q  128 aaactccactttttaaatacattcaataattaatgtatctgatctttattatagaccgggtacattaattattcaatatatctaaaaagtagagttttgt 227  Q
    ||||| ||||||| | ||||||| ||||||| ||||||||  |||||||||||||||||  | ||| |||||||||| ||||||||||||| |||||| |    
T  14589565 aaacttcacttttcagatacattgaataattcatgtatctagtctttattatagaccggacagattgattattcaatgtatctaaaaagtaaagttttat 14589664  T
Q  228 ttataatagtga 239  Q
    ||||||||||||    
T  14589665 ttataatagtga 14589676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 128 - 235
Target Start/End: Complemental strand, 26388309 - 26388202
Alignment:
Q  128 aaactccactttttaaatacattcaataattaatgtatctgatctttattatagaccgggtacattaattattcaatatatctaaaaagtagagttttgt 227  Q
    ||||||||||||||| ||| ||| ||||||||||||||    ||| || || |||   | ||||||||||||||||||||||||||||||||||||||||    
T  26388309 aaactccactttttatatatattgaataattaatgtattcagtctataataaagattagatacattaattattcaatatatctaaaaagtagagttttgt 26388210  T
Q  228 ttataata 235  Q
    ||||||||    
T  26388209 ttataata 26388202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 128 - 238
Target Start/End: Original strand, 33123033 - 33123143
Alignment:
Q  128 aaactccactttttaaatacattcaataattaatgtatctgatctttattatagaccgggtacattaattattcaatatatctaaaaagtagagttttgt 227  Q
    ||||| ||||||||||||||||| ||||||||||||||||  ||||| ||||||||  | ||| ||||||||| | | ||||||||||||| | |||||     
T  33123033 aaacttcactttttaaatacattgaataattaatgtatctagtcttttttatagacttgatacgttaattattaagtgtatctaaaaagtaaacttttgc 33123132  T
Q  228 ttataatagtg 238  Q
    |||||||||||    
T  33123133 ttataatagtg 33123143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 128 - 239
Target Start/End: Original strand, 14623223 - 14623334
Alignment:
Q  128 aaactccactttttaaatacattcaataattaatgtatctgatctttattatagaccgggtacattaattattcaatatatctaaaaagtagagttttgt 227  Q
    ||||| ||||||| | ||||||| ||||||| |||||||| ||||||||||||||| |   | ||||||| |||||| ||||||||||||  |||||| |    
T  14623223 aaacttcacttttcagatacattgaataattcatgtatctaatctttattatagactgaacagattaatttttcaatgtatctaaaaagtgaagttttat 14623322  T
Q  228 ttataatagtga 239  Q
    ||||||||||||    
T  14623323 ttataatagtga 14623334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 128 - 238
Target Start/End: Original strand, 3989532 - 3989642
Alignment:
Q  128 aaactccactttttaaatacattcaataattaatgtatctgatctttattatagaccgggtacattaattattcaatatatctaaaaagtagagttttgt 227  Q
    ||||| ||||||||||||||||  |||||| ||||| |||  ||||||||||||||  | ||||| ||||||||||| ||||| || |||  |||||||     
T  3989532 aaacttcactttttaaatacataaaataatcaatgtttctagtctttattatagactagatacatcaattattcaatgtatcttaatagttaagttttga 3989631  T
Q  228 ttataatagtg 238  Q
    |||||||||||    
T  3989632 ttataatagtg 3989642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 128 - 239
Target Start/End: Complemental strand, 29938733 - 29938623
Alignment:
Q  128 aaactccactttttaaatacattcaataattaatgtatctgatctttattatagaccgggtacattaattattcaatatatctaaaaagtagagttttgt 227  Q
    |||||| |||||||| ||||||| ||||||||||||||||  |||||||| || ||  | ||||||||||||| ||| ||||||||||||  | ||||      
T  29938733 aaactctactttttagatacattgaataattaatgtatctagtctttattgtatactagatacattaattatt-aatgtatctaaaaagtgaaattttac 29938635  T
Q  228 ttataatagtga 239  Q
    ||||||||||||    
T  29938634 ttataatagtga 29938623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 217
Target Start/End: Complemental strand, 1158360 - 1158278
Alignment:
Q  135 actttttaaatacattcaataattaatgtatctgatctttattatagaccgggtacattaattattcaatatatctaaaaagt 217  Q
    |||||||||||||||| ||||||| |||||| || |||  | |||||||||  |||||||||||||||||  |||||||||||    
T  1158360 actttttaaatacattgaataattgatgtatttggtctagaatatagaccgaatacattaattattcaatgaatctaaaaagt 1158278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 245
Target Start/End: Original strand, 17773527 - 17773640
Alignment:
Q  132 tccactttttaaatacattcaataattaatgtatctgatctttattatagaccgggtacattaattattcaatatatctaaaaagtagagttttgtttat 231  Q
    ||||||||||| ||||||||||||| | |||||| || ||||||||||| | |   ||||| | | ||| ||| ||||||||||||||| ||||| ||||    
T  17773527 tccactttttagatacattcaataaatgatgtatgtggtctttattatatatcacatacatcattaattgaatgtatctaaaaagtagatttttgcttat 17773626  T
Q  232 aatagtgacaggag 245  Q
    | ||||||| ||||    
T  17773627 attagtgaccggag 17773640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 128 - 180
Target Start/End: Original strand, 14093103 - 14093155
Alignment:
Q  128 aaactccactttttaaatacattcaataattaatgtatctgatctttattata 180  Q
    |||||| |||||||||||||||| ||||||||||||||||  |||||||||||    
T  14093103 aaactcaactttttaaatacattaaataattaatgtatctagtctttattata 14093155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 134 - 225
Target Start/End: Original strand, 29938644 - 29938734
Alignment:
Q  134 cactttttaaatacattcaataattaatgtatctgatctttattatagaccgggtacattaattattcaatatatctaaaaagtagagtttt 225  Q
    ||||||||| ||||||| ||||||||||||||||  | |  | || ||||  | ||||||||||||||||| ||||||||||||||||||||    
T  29938644 cactttttagatacatt-aataattaatgtatctagtatacaataaagactagatacattaattattcaatgtatctaaaaagtagagtttt 29938734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 205
Target Start/End: Complemental strand, 2284874 - 2284821
Alignment:
Q  152 aataattaatgtatctgatctttattatagaccgggtacattaattattcaata 205  Q
    ||||||||||||||||||||| ||||||| | | | ||||||||||||||||||    
T  2284874 aataattaatgtatctgatctatattataaatcagatacattaattattcaata 2284821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 33123069 - 33123016
Alignment:
Q  188 tacattaattattcaatatatctaaaaagtagagttttgtttataatagtgaca 241  Q
    ||||||||||||||||| ||| ||||||||  |||||||||||||||| |||||    
T  33123069 tacattaattattcaatgtatttaaaaagtgaagttttgtttataataatgaca 33123016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 240
Target Start/End: Complemental strand, 14589654 - 14589549
Alignment:
Q  135 actttttaaatacattcaataattaatgtatctgatctttattatagaccgggtacattaattattcaatatatctaaaaagtagagttttgtttataat 234  Q
    |||||||| ||||||| |||||| ||| | || | ||| || || ||||  | ||||| ||||||||||| ||||| ||||||  |||||||||||||||    
T  14589654 actttttagatacattgaataatcaatctgtccggtctataataaagactagatacatgaattattcaatgtatctgaaaagtgaagttttgtttataat 14589555  T
Q  235 agtgac 240  Q
    | ||||    
T  14589554 aatgac 14589549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 240
Target Start/End: Complemental strand, 17773612 - 17773507
Alignment:
Q  135 actttttaaatacattcaataattaatgtatctgatctttattatagaccgggtacattaattattcaatatatctaaaaagtagagttttgtttataat 234  Q
    |||||||| ||||||||||| | | |||||| |||| | || || |||||   ||||| | ||||| ||| |||||||||||| || ||||||||||| |    
T  17773612 actttttagatacattcaattaatgatgtatgtgatatataataaagaccacatacatcatttattgaatgtatctaaaaagtggatttttgtttatatt 17773513  T
Q  235 agtgac 240  Q
    ||||||    
T  17773512 agtgac 17773507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 240
Target Start/End: Complemental strand, 30629642 - 30629597
Alignment:
Q  195 attattcaatatatctaaaaagtagagttttgtttataatagtgac 240  Q
    |||||||||| ||||||||||||  | |||||||||||||||||||    
T  30629642 attattcaatctatctaaaaagtgaaattttgtttataatagtgac 30629597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 239
Target Start/End: Complemental strand, 7632881 - 7632777
Alignment:
Q  135 actttttaaatacattcaataattaatgtatctgatctttattatagaccgggtacattaattattcaatatatctaaaaagtagagttttgtttataat 234  Q
    |||||||| ||||| | ||||||||||||||| | ||| || || ||||  | |||||| |||||| ||| ||  || |||||  |||||||||||||||    
T  7632881 actttttagatacactgaataattaatgtatccggtctataataaagactagatacattgattattgaatgtagttagaaagtgaagttttgtttataat 7632782  T
Q  235 agtga 239  Q
    |||||    
T  7632781 agtga 7632777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 135 - 246
Target Start/End: Complemental strand, 21032643 - 21032532
Alignment:
Q  135 actttttaaatacattcaataattaatgtatctgatctttattatagaccgggtacattaattattcaatatatctaaaaagtagagttttgtttataat 234  Q
    |||||||| ||| ||| ||||||||||||||||  |||||||||||||| |  ||||||||||||||||| ||| |||||||| |||||||| |||||||    
T  21032643 actttttagatatattgaataattaatgtatctagtctttattatagactgaatacattaattattcaatgtatataaaaagtggagttttgcttataat 21032544  T
Q  235 agtgacaggaga 246  Q
    |||||| |||||    
T  21032543 agtgactggaga 21032532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 128 - 235
Target Start/End: Original strand, 21032554 - 21032661
Alignment:
Q  128 aaactccactttttaaatacattcaataattaatgtatctgatctttattatagaccgggtacattaattattcaatatatctaaaaagtagagttttgt 227  Q
    ||||||||||||||| ||||||| ||||||||||||||    ||| || || ||||  | ||||||||||||||||||||||||||||||||| ||||||    
T  21032554 aaactccactttttatatacattgaataattaatgtattcagtctataataaagactagatacattaattattcaatatatctaaaaagtagaattttgt 21032653  T
Q  228 ttataata 235  Q
    ||||||||    
T  21032654 ttataata 21032661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 135 - 240
Target Start/End: Original strand, 42364249 - 42364354
Alignment:
Q  135 actttttaaatacattcaataattaatgtatctgatctttattatagaccgggtacattaattattcaatatatctaaaaagtagagttttgtttataat 234  Q
    |||||||||||||||| |||||||||||||| |  ||||||||||| ||  | |||  |||||||||||| ||||||||||||  ||||||| |||||||    
T  42364249 actttttaaatacattgaataattaatgtatgtagtctttattataaactagataccctaattattcaatgtatctaaaaagtgaagttttgcttataat 42364348  T
Q  235 agtgac 240  Q
    ||||||    
T  42364349 agtgac 42364354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 137 - 245
Target Start/End: Complemental strand, 5240335 - 5240227
Alignment:
Q  137 tttttaaatacattcaataattaatgtatctgatctttattatagaccgggtacattaattattcaatatatctaaaaagtagagttttgtttataatag 236  Q
    |||||| ||||||| |||||||||||||||| | |||||||||| ||  | ||||||||||||||||| |||||||||| |  | ||||| |||||||||    
T  5240335 tttttagatacattgaataattaatgtatctaaactttattatatactagatacattaattattcaatgtatctaaaaaatcaaattttgcttataatag 5240236  T
Q  237 tgacaggag 245  Q
    |||| ||||    
T  5240235 tgaccggag 5240227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 188 - 245
Target Start/End: Complemental strand, 26221082 - 26221025
Alignment:
Q  188 tacattaattattcaatatatctaaaaagtagagttttgtttataatagtgacaggag 245  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||||| |||| ||||    
T  26221082 tacattaattattcaatgtatctaaaaagtaaagttttgtttataatattgaccggag 26221025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 42364278 - 42364217
Alignment:
Q  188 tacattaattattcaatatatctaaaaagtagagttttgtttataatagtgacaggagatag 249  Q
    ||||||||||||||||| ||| ||||||||| | |||||||||||| |||||| ||||||||    
T  42364278 tacattaattattcaatgtatttaaaaagtaaatttttgtttataacagtgaccggagatag 42364217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 135 - 239
Target Start/End: Complemental strand, 29486609 - 29486505
Alignment:
Q  135 actttttaaatacattcaataattaatgtatctgatctttattatagaccgggtacattaattattcaatatatctaaaaagtagagttttgtttataat 234  Q
    |||||||| ||||||| |||||||||| ||| |  ||||||| ||| ||  | ||||||||||||||||| ||||||||| ||  | ||||| |||||||    
T  29486609 actttttagatacattgaataattaatatatttagtctttatcataaactagatacattaattattcaatgtatctaaaatgtgaaattttgcttataat 29486510  T
Q  235 agtga 239  Q
    |||||    
T  29486509 agtga 29486505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 135 - 238
Target Start/End: Original strand, 26221053 - 26221156
Alignment:
Q  135 actttttaaatacattcaataattaatgtatctgatctttattatagaccgggtacattaattattcaatatatctaaaaagtagagttttgtttataat 234  Q
    |||||||| ||||||| ||||||||||||||||  | |||||||||||  |  || |||||||||||| | ||||||||||||  ||||||  ||||| |    
T  26221053 actttttagatacattgaataattaatgtatctagtttttattatagatggtatatattaattattcagtgtatctaaaaagtgaagttttacttatatt 26221152  T
Q  235 agtg 238  Q
    ||||    
T  26221153 agtg 26221156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 215
Target Start/End: Complemental strand, 32522637 - 32522559
Alignment:
Q  137 tttttaaatacattcaataattaatgtatctgatctttattatagaccgggtacattaattattcaatatatctaaaaa 215  Q
    |||||||||||||| ||||||||||||||||||||| ||     ||| |  |||||||||||||||||||||| |||||    
T  32522637 tttttaaatacattgaataattaatgtatctgatctataaatgtgactgcatacattaattattcaatatatcaaaaaa 32522559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 6834088 - 6834036
Alignment:
Q  188 tacattaattattcaatatatctaaaaagtagagttttgtttataatagtgac 240  Q
    ||||||||||||||||||||||||||||||| | ||||  |||||||| ||||    
T  6834088 tacattaattattcaatatatctaaaaagtaaaattttacttataataatgac 6834036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 167
Target Start/End: Original strand, 19522547 - 19522579
Alignment:
Q  135 actttttaaatacattcaataattaatgtatct 167  Q
    |||||||||||||||||||||||||||||||||    
T  19522547 actttttaaatacattcaataattaatgtatct 19522579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 239
Target Start/End: Original strand, 694238 - 694339
Alignment:
Q  138 ttttaaatacattcaataattaatgtatctgatctttattatagaccgggtacattaattattcaatatatctaaaaagtagagttttgtttataatagt 237  Q
    ||||||||  ||||||| | | |||||| ||||||||||||||||||   ||||| | ||||| |||| | |||||| || || |||||||||||| |||    
T  694238 ttttaaatttattcaattaattatgtatatgatctttattatagaccacatacataatttattaaataaacctaaaatgttgatttttgtttataagagt 694337  T
Q  238 ga 239  Q
    ||    
T  694338 ga 694339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 239
Target Start/End: Complemental strand, 7604264 - 7604195
Alignment:
Q  170 tctttattatagaccgggtacattaattattcaatatatctaaaaagtagagttttgtttataatagtga 239  Q
    ||||||||||||||  | | ||||| ||||||| ||||||||||||||  | ||||| ||||||||||||    
T  7604264 tctttattatagacttgatgcattacttattcagtatatctaaaaagtgaaattttgcttataatagtga 7604195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 246
Target Start/End: Original strand, 8309855 - 8309928
Alignment:
Q  173 ttattatagaccgggtacattaattattcaatatatctaaaaagtagagttttgtttataatagtgacaggaga 246  Q
    |||||||||||| ||||||||| |||||||||  |||| |||| |  | ||||| || ||||||||||||||||    
T  8309855 ttattatagaccaggtacattagttattcaatgaatctgaaaatttaatttttgcttgtaatagtgacaggaga 8309928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 217
Target Start/End: Original strand, 28499864 - 28499893
Alignment:
Q  188 tacattaattattcaatatatctaaaaagt 217  Q
    ||||||||||||||||||||||||||||||    
T  28499864 tacattaattattcaatatatctaaaaagt 28499893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 7065696 - 7065660
Alignment:
Q  135 actttttaaatacattcaataattaatgtatctgatc 171  Q
    ||||||||||| |||| ||||||||||||||||||||    
T  7065696 actttttaaattcattgaataattaatgtatctgatc 7065660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 128 - 245
Target Start/End: Original strand, 50334943 - 50335059
Alignment:
Q  128 aaactccactttttaaatacattcaataattaatgtatctgatctttattatagaccgggtacattaattattcaatatatctaaaaagtagagttttgt 227  Q
    ||||| ||| ||||| ||||||| |||||||||||||||| |||||||||||||   |  |||||||||||||||||||||||||||| || | |||||     
T  50334943 aaacttcacattttagatacattgaataattaatgtatctaatctttattataggttgtatacattaattattcaatatatctaaaaaata-aattttgc 50335041  T
Q  228 ttataatagtgacaggag 245  Q
    ||||||||||||| ||||    
T  50335042 ttataatagtgaccggag 50335059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 135 - 237
Target Start/End: Complemental strand, 29497471 - 29497369
Alignment:
Q  135 actttttaaatacattcaataattaatgtatctgatctttattatagaccgggtacattaattattcaatatatctaaaaagtagagttttgtttataat 234  Q
    |||||||| ||||||| || ||||||| |||||  |||||||| ||||| |  ||||||||||| ||||| ||||||||||||| | ||||| |||||||    
T  29497471 actttttagatacattgaacaattaatatatctagtctttattgtagactgaatacattaattagtcaatgtatctaaaaagtaaaattttgcttataat 29497372  T
Q  235 agt 237  Q
    |||    
T  29497371 agt 29497369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 134 - 215
Target Start/End: Original strand, 53711889 - 53711970
Alignment:
Q  134 cactttttaaatacattcaataattaatgtatctgatctttattatagaccgggtacattaattattcaatatatctaaaaa 215  Q
    |||||||||||||| || |||||||||||||| ||||||||  |||||||  | ||| ||||||||||||||||| ||||||    
T  53711889 cactttttaaatactttaaataattaatgtatttgatctttcatatagactagatacgttaattattcaatatatataaaaa 53711970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 138 - 217
Target Start/End: Complemental strand, 35239761 - 35239682
Alignment:
Q  138 ttttaaatacattcaataattaatgtatctgatctttattatagaccgggtacattaattattcaatatatctaaaaagt 217  Q
    ||||| ||||||| |||| |||||||||||  ||||||||||||||    ||||||||||||||||| ||||||||||||    
T  35239761 ttttagatacattgaatagttaatgtatctagtctttattatagacttaatacattaattattcaatgtatctaaaaagt 35239682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 187 - 235
Target Start/End: Original strand, 36344517 - 36344565
Alignment:
Q  187 gtacattaattattcaatatatctaaaaagtagagttttgtttataata 235  Q
    |||||||||||||||||| ||||||||||||| | ||||||||||||||    
T  36344517 gtacattaattattcaatgtatctaaaaagtataattttgtttataata 36344565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 217
Target Start/End: Original strand, 28406500 - 28406582
Alignment:
Q  135 actttttaaatacattcaataattaatgtatctgatctttattatagaccgggtacattaattattcaatatatctaaaaagt 217  Q
    |||||||| || | || |||||||||||||| || ||| |||| |||||||||||||| |||||||||||  | |||||||||    
T  28406500 actttttagattcgttgaataattaatgtatttggtctatattctagaccgggtacataaattattcaatgaacctaaaaagt 28406582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 217
Target Start/End: Complemental strand, 48593255 - 48593175
Alignment:
Q  137 tttttaaatacattcaataattaatgtatctgatctttattatagaccgggtacattaattattcaatatatctaaaaagt 217  Q
    |||||| || |||| ||||||| |||||| || ||| |||| |||||| | ||||| ||||||||||| ||||||||||||    
T  48593255 tttttagattcattgaataatttatgtatttggtctatattctagacccgatacatcaattattcaatgtatctaaaaagt 48593175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 134 - 209
Target Start/End: Original strand, 32186917 - 32186992
Alignment:
Q  134 cactttttaaatacattcaataattaatgtatctgatctttattatagaccgggtacattaattattcaatatatc 209  Q
    ||||||||||||||||  |||||||||||||| |  ||||||||||| ||  | |||||||||||| |||| ||||    
T  32186917 cactttttaaatacatggaataattaatgtatatagtctttattataaactagatacattaattatccaatgtatc 32186992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 235
Target Start/End: Complemental strand, 50334979 - 50334932
Alignment:
Q  188 tacattaattattcaatatatctaaaaagtagagttttgtttataata 235  Q
    ||||||||||||||||| ||||||||| ||  ||||||||||||||||    
T  50334979 tacattaattattcaatgtatctaaaatgtgaagttttgtttataata 50334932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 204
Target Start/End: Original strand, 21150171 - 21150239
Alignment:
Q  135 actttttaaatacattcaataattaatgtatctgatctttattatagaccgggtacattaattattcaat 204  Q
    |||||||| || |||| ||||| |||||||||| || | ||| ||||||| |||||||||||||||||||    
T  21150171 actttttagattcattaaataactaatgtatctaatttatat-atagacccggtacattaattattcaat 21150239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 235
Target Start/End: Original strand, 48748536 - 48748636
Alignment:
Q  137 tttttaaatacattcaataattaatgtatctgatctttattatagaccgggtacattaattattcaatatatctaa--aaagtagagttttgtttataat 234  Q
    |||||| ||| ||| |||||||||| ||| | || ||||||||| ||  | ||||||||||||||||||||| |||  ||| || ||||||| |||||||    
T  48748536 tttttagatatattaaataattaatatatttaatatttattataaactagatacattaattattcaatatatttaaataaaataaagttttgattataat 48748635  T
Q  235 a 235  Q
    |    
T  48748636 a 48748636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 180
Target Start/End: Original strand, 42449131 - 42449179
Alignment:
Q  132 tccactttttaaatacattcaataattaatgtatctgatctttattata 180  Q
    ||||||||||| ||||||||||| | | |||||| ||||||||||||||    
T  42449131 tccactttttagatacattcaattaatgatgtatgtgatctttattata 42449179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 128 - 240
Target Start/End: Original strand, 38646188 - 38646301
Alignment:
Q  128 aaactccactttttaaatacattcaataattaatgtatctgatctttattatagaccgggtacattaa-ttattcaatatatctaaaaagtagagttttg 226  Q
    |||||| |||||||| ||||||| |||||||||| ||| | || ||| ||||||||||  |||||||| |||||||||||||||||| |||  |||||||    
T  38646188 aaactcaactttttagatacattgaataattaatatatttaatttttgttatagaccgaatacattaaattattcaatatatctaaatagtgaagttttg 38646287  T
Q  227 tttataatagtgac 240  Q
     |||||||||||||    
T  38646288 cttataatagtgac 38646301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 137 - 240
Target Start/End: Original strand, 4132418 - 4132521
Alignment:
Q  137 tttttaaatacattcaataattaatgtatctgatctttattatagaccgggtacattaattattcaatatatctaaaaagtagagttttgtttataatag 236  Q
    |||||| ||||||| |||||||||||||| |  | ||||||||||||    |||||||| |||||||| ||||||||||||  ||||||||||||||||     
T  4132418 tttttagatacattgaataattaatgtatatagtatttattatagactaaatacattaaatattcaatgtatctaaaaagttaagttttgtttataataa 4132517  T
Q  237 tgac 240  Q
    ||||    
T  4132518 tgac 4132521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 43250421 - 43250473
Alignment:
Q  188 tacattaattattcaatatatctaaaaagtagagttttgtttataatagtgac 240  Q
    ||||||||||||||||| ||||||||||||| ||||||| |||||||||||||    
T  43250421 tacattaattattcaatgtatctaaaaagtaaagttttgcttataatagtgac 43250473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 157 - 245
Target Start/End: Original strand, 2363076 - 2363163
Alignment:
Q  157 ttaatgtatctgatctttattatagaccgggtacattaattattcaatatatctaaaaagtagagttttgtttataatagtgacaggag 245  Q
    ||||||||||| |||| ||||||| | | | ||||||||||||||||| ||| || |||||| ||||||||||| ||||||||| ||||    
T  2363076 ttaatgtatctaatctatattata-atcagatacattaattattcaatctatttagaaagtaaagttttgtttacaatagtgactggag 2363163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 26982822 - 26982770
Alignment:
Q  188 tacattaattattcaatatatctaaaaagtagagttttgtttataatagtgac 240  Q
    ||||||||||||||||| ||||||||||||  ||||||| |||||||||||||    
T  26982822 tacattaattattcaatgtatctaaaaagtgaagttttgcttataatagtgac 26982770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 245
Target Start/End: Complemental strand, 21857127 - 21857070
Alignment:
Q  188 tacattaattattcaatatatctaaaaagtagagttttgtttataatagtgacaggag 245  Q
    ||||||||||||||||| | ||||||||||| | ||||| ||||||||||||| ||||    
T  21857127 tacattaattattcaatgtgtctaaaaagtaaacttttgcttataatagtgaccggag 21857070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 240
Target Start/End: Complemental strand, 43250418 - 43250375
Alignment:
Q  197 tattcaatatatctaaaaagtagagttttgtttataatagtgac 240  Q
    |||||||| ||||||||||||| ||||||| |||||||||||||    
T  43250418 tattcaatgtatctaaaaagtaaagttttgcttataatagtgac 43250375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 237
Target Start/End: Complemental strand, 38646221 - 38646175
Alignment:
Q  191 attaattattcaatatatctaaaaagtagagttttgtttataatagt 237  Q
    |||||||||||||| |||||||||||| |||||||  ||||||||||    
T  38646221 attaattattcaatgtatctaaaaagttgagttttacttataatagt 38646175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 237
Target Start/End: Original strand, 41115579 - 41115681
Alignment:
Q  135 actttttaaatacattcaataattaatgtatctgatctttattatagaccgggtacattaattattcaatatatctaaaaagtagagttttgtttataat 234  Q
    ||||| || ||||||| || ||||||||||||| ||||||||||||||   | ||||||||||||  ||| ||| |||||| |  ||||||  |||||||    
T  41115579 actttgtagatacattgaacaattaatgtatctaatctttattatagagtagatacattaattatgtaatgtatataaaaaattaagttttacttataat 41115678  T
Q  235 agt 237  Q
    |||    
T  41115679 agt 41115681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 48446022 - 48445972
Alignment:
Q  188 tacattaattattcaatatatctaaaaagtagagttttgtttataatagtg 238  Q
    ||||| |||||||||||| |||||||||||| | |||| ||||||||||||    
T  48446022 tacatcaattattcaataaatctaaaaagtaaatttttctttataatagtg 48445972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 21857168 - 21857220
Alignment:
Q  188 tacattaattattcaatatatctaaaaagtagagttttgtttataatagtgac 240  Q
    ||||||||||||||||||| |||||||| |  | ||||| |||||||||||||    
T  21857168 tacattaattattcaatatgtctaaaaaatgaatttttgcttataatagtgac 21857220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 128 - 241
Target Start/End: Original strand, 8352157 - 8352270
Alignment:
Q  128 aaactccactttttaaatacattcaataattaatgtatctgatctttattatagaccgggtacattaattattcaatatatctaaaaagtagagttttgt 227  Q
    ||||| || |||||| ||||||| ||| |||||||||||| || |||||||||||     |||||||||||||||||||||||||||||   |||||||     
T  8352157 aaacttcattttttagatacattgaatgattaatgtatctaatatttattatagaataaatacattaattattcaatatatctaaaaagggaagttttgc 8352256  T
Q  228 ttataatagtgaca 241  Q
    |||||||| |||||    
T  8352257 ttataataatgaca 8352270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 188 - 233
Target Start/End: Original strand, 30800291 - 30800336
Alignment:
Q  188 tacattaattattcaatatatctaaaaagtagagttttgtttataa 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  30800291 tacattaattattcaatatatctaaaaagtagagttttgtttataa 30800336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 240
Target Start/End: Complemental strand, 30800263 - 30800185
Alignment:
Q  162 gtatctgatctttattatagaccgggtacattaattattcaatatatctaaaaagtagagttttgtttataatagtgac 240  Q
    |||||| ||||||||||||||| || ||||||||| ||||||| |||||| |||||| | |||||||||||| ||||||    
T  30800263 gtatctaatctttattatagactggatacattaatcattcaatgtatctagaaagtaaaattttgtttataagagtgac 30800185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 134 - 217
Target Start/End: Original strand, 26468322 - 26468405
Alignment:
Q  134 cactttttaaatacattcaataattaatgtatctgatctttattatagaccgggtacattaattattcaatatatctaaaaagt 217  Q
    ||||||||||||||||| |||||||||||||||| || |||||||||||||   || || ||||||||||| |||  |||||||    
T  26468322 cactttttaaatacattgaataattaatgtatctaatttttattatagaccatatatatcaattattcaatgtataaaaaaagt 26468405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 135 - 235
Target Start/End: Complemental strand, 14773834 - 14773734
Alignment:
Q  135 actttttaaatacattcaataattaatgtatctgatctttattatagaccgggtacattaattattcaatatatctaaaaagtagagttttgtttataat 234  Q
    |||||||| ||| |||  |||||||||||||||  ||| |||||||||| || |||| ||||||||||||||||  ||||| || | |||||| ||||||    
T  14773834 actttttagatatattgtataattaatgtatctagtctgtattatagactggatacaataattattcaatatattcaaaaaataaaattttgtctataat 14773735  T
Q  235 a 235  Q
    |    
T  14773734 a 14773734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 26468352 - 26468300
Alignment:
Q  188 tacattaattattcaatatatctaaaaagtagagttttgtttataatagtgac 240  Q
    ||||||||||||||||| ||| ||||||||  | |||||||||||||||||||    
T  26468352 tacattaattattcaatgtatttaaaaagtgaaattttgtttataatagtgac 26468300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 135 - 218
Target Start/End: Original strand, 8900823 - 8900906
Alignment:
Q  135 actttttaaatacattcaataattaatgtatctgatctttattatagaccgggtacattaattattcaatatatctaaaaagta 218  Q
    ||||||||  |||||| |||||||||||||||| | || ||     |||||| |||||||||||||||||||| ||||||||||    
T  8900823 actttttaggtacattgaataattaatgtatctaacctataaatgtgaccggatacattaattattcaatatacctaaaaagta 8900906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 897042 - 897120
Alignment:
Q  137 tttttaaatacattcaataattaatgtatctgatctttattatagaccgggtacattaattattcaatatatctaaaaa 215  Q
    |||||| ||||||| |||||||||||||| |  |||| ||| || |  || ||||||||||||||||| ||||||||||    
T  897042 tttttagatacatttaataattaatgtatttagtcttcattgtaaatgggatacattaattattcaatgtatctaaaaa 897120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 180
Target Start/End: Complemental strand, 15439973 - 15439928
Alignment:
Q  135 actttttaaatacattcaataattaatgtatctgatctttattata 180  Q
    |||||||||||||||||||| | |||||||| || |||||||||||    
T  15439973 actttttaaatacattcaattaataatgtatgtggtctttattata 15439928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 217
Target Start/End: Original strand, 31635767 - 31635856
Alignment:
Q  128 aaactccactttttaaatacattcaataattaatgtatctgatctttattatagaccgggtacattaattattcaatatatctaaaaagt 217  Q
    ||||| ||||||||| ||||||| |||||| |||||||  | |  |||||||||||  | || |||| ||||||||| ||||||||||||    
T  31635767 aaacttcactttttatatacattgaataataaatgtattcggtgcttattatagactagatatattagttattcaatgtatctaaaaagt 31635856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 246
Target Start/End: Complemental strand, 4602684 - 4602644
Alignment:
Q  206 tatctaaaaagtagagttttgtttataatagtgacaggaga 246  Q
    |||||||||||| || ||||||||||| |||||||||||||    
T  4602684 tatctaaaaagtggaattttgtttatattagtgacaggaga 4602644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 180
Target Start/End: Complemental strand, 5856471 - 5856423
Alignment:
Q  132 tccactttttaaatacattcaataattaatgtatctgatctttattata 180  Q
    ||||||||||||||||||||||| | | |||||| || |||||||||||    
T  5856471 tccactttttaaatacattcaattaattatgtatgtggtctttattata 5856423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 8352193 - 8352141
Alignment:
Q  188 tacattaattattcaatatatctaaaaagtagagttttgtttataatagtgac 240  Q
    ||||||||| ||||||| |||||||||| |  ||||||| |||||||||||||    
T  8352193 tacattaatcattcaatgtatctaaaaaatgaagttttgcttataatagtgac 8352141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 233
Target Start/End: Complemental strand, 15497551 - 15497495
Alignment:
Q  177 tatagaccgggtacattaattattcaatatatctaaaaagtagagttttgtttataa 233  Q
    |||||||||| ||||||| ||| | |||| ||||||||||| || ||||||||||||    
T  15497551 tatagaccggatacattacttagttaataaatctaaaaagttgatttttgtttataa 15497495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 145 - 246
Target Start/End: Original strand, 8996792 - 8996893
Alignment:
Q  145 tacattcaataattaatgtatctgatctttattatagaccgggtacattaattattcaatatatctaaaaagtagagttttgtttataatagtgacagga 244  Q
    |||||| ||||||||||||||||  ||| || || ||||    |||||| |||||||||| |||||| |||||||||||||| ||||||||||||| |||    
T  8996792 tacattgaataattaatgtatctagtctataataaagactatatacattgattattcaatgtatctagaaagtagagttttgcttataatagtgaccgga 8996891  T
Q  245 ga 246  Q
    ||    
T  8996892 ga 8996893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 204
Target Start/End: Complemental strand, 8996871 - 8996795
Alignment:
Q  128 aaactccactttttaaatacattcaataattaatgtatctgatctttattatagaccgggtacattaattattcaat 204  Q
    |||||| ||||| || ||||||| |||||| ||||||| |  ||||||||||||||  | |||||||||||||||||    
T  8996871 aaactctactttctagatacattgaataatcaatgtatatagtctttattatagactagatacattaattattcaat 8996795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 202 - 245
Target Start/End: Complemental strand, 20504287 - 20504244
Alignment:
Q  202 aatatatctaaaaagtagagttttgtttataatagtgacaggag 245  Q
    ||||||||||||||||||| ||||||||||| ||||||| ||||    
T  20504287 aatatatctaaaaagtagatttttgtttatattagtgaccggag 20504244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 212
Target Start/End: Complemental strand, 25903797 - 25903722
Alignment:
Q  137 tttttaaatacattcaataattaatgtatctgatctttattatagaccgggtacattaattattcaatatatctaa 212  Q
    |||||| ||||||| ||||||||||||||||  |||| ||| || ||  | ||||||||||||||||| |||||||    
T  25903797 tttttagatacatttaataattaatgtatctactcttcattgtaaacgagatacattaattattcaatgtatctaa 25903722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 8717540 - 8717618
Alignment:
Q  137 tttttaaatacattcaataattaatgtatctgatctttattatagaccgggtacattaattattcaatatatctaaaaa 215  Q
    |||||| ||||||| |||||||||||||| |  ||||||||||| ||  | ||||||| ||||||||| ||| ||||||    
T  8717540 tttttagatacattaaataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaa 8717618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 205
Target Start/End: Original strand, 30429110 - 30429167
Alignment:
Q  147 cattcaataattaatgtatctgatctttattatagaccgggtacattaattattcaata 205  Q
    ||||||||||||||||||||||| ||||| |||||||  | ||||||| ||||||||||    
T  30429110 cattcaataattaatgtatctgaccttta-tatagactagatacattagttattcaata 30429167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 204
Target Start/End: Original strand, 41221671 - 41221727
Alignment:
Q  147 cattcaataattaatgtatctgatctttattatagaccgggtacattaattattcaat 204  Q
    |||| |||||||||||||||||| ||||  |||||||||| ||||||| |||||||||    
T  41221671 catttaataattaatgtatctga-ctttcatatagaccggatacattagttattcaat 41221727  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 10495726 - 10495778
Alignment:
Q  188 tacattaattattcaatatatctaaaaagtagagttttgtttataatagtgac 240  Q
    |||||||| |||||||| ||||||||||||  | ||||| |||||||||||||    
T  10495726 tacattaaatattcaatgtatctaaaaagtgaaattttgcttataatagtgac 10495778  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 245
Target Start/End: Original strand, 20218614 - 20218685
Alignment:
Q  174 tattatagaccgggtacattaattattcaatatatctaaaaagtagagtt-ttgtttataatagtgacaggag 245  Q
    |||||||||| || ||||| |||||||||||  ||||||||||| || || ||| ||||||||||||||||||    
T  20218614 tattatagactggatacatcaattattcaatgaatctaaaaagt-gatttcttgcttataatagtgacaggag 20218685  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 29168611 - 29168579
Alignment:
Q  135 actttttaaatacattcaataattaatgtatct 167  Q
    |||||||||||||||| ||||||||||||||||    
T  29168611 actttttaaatacattaaataattaatgtatct 29168579  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 215
Target Start/End: Original strand, 39792136 - 39792204
Alignment:
Q  147 cattcaataattaatgtatctgatctttattatagaccgggtacattaattattcaatatatctaaaaa 215  Q
    |||| ||||||||||||||||  | |||||||||||   | ||||||||||||||| | ||||||||||    
T  39792136 cattaaataattaatgtatctagtttttattatagattagatacattaattattcattgtatctaaaaa 39792204  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 180
Target Start/End: Original strand, 43426654 - 43426702
Alignment:
Q  132 tccactttttaaatacattcaataattaatgtatctgatctttattata 180  Q
    ||||||||||||||||||||||| | | |||||| || |||||||||||    
T  43426654 tccactttttaaatacattcaattaatgatgtatgtggtctttattata 43426702  T

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Target: scaffold0113 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 240
Target Start/End: Complemental strand, 40538 - 40459
Alignment:
Q  161 tgtatctgatctttattatagaccgggtacattaattattcaatatatctaaaaagtagagttttgtttataatagtgac 240  Q
    ||||| |||||||||||||||||||  ||||| | ||| | |||| |||||||| || || |||| ||||||||||||||    
T  40538 tgtatatgatctttattatagaccgcatacatcatttaatgaataaatctaaaatgttgatttttatttataatagtgac 40459  T

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