View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10751_low_14 (Length: 276)
Name: NF10751_low_14
Description: NF10751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10751_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 114; Significance: 7e-58; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 18255336 - 18255465
Alignment:
| Q |
1 |
tgttaggaagaaccatataaaagttgataagtccacatctttgtgttgccatgaatttgaatcgggggaaaatcaacctccttaaagaaagaaagctaag |
100 |
Q |
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| T |
18255336 |
tgttaggaagaaccatataaaagttgataagtccacatctttgtgttgccatgaatctgaatcggggaaaaatcaacctccttaaagaaagaaaggtaag |
18255435 |
T |
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| Q |
101 |
tttatttctattttcgaaaaatcatattgg |
130 |
Q |
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| T |
18255436 |
tttatttctattttcgaaaaatcatgttgg |
18255465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 124 - 259
Target Start/End: Original strand, 18255501 - 18255631
Alignment:
| Q |
124 |
atattggatcatgcactaagcaccatatgtccaattttatatatatcgtattcaaaactcatcttcaaatttttctgctttcacttcccaattgtctagt |
223 |
Q |
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| T |
18255501 |
atattagatcatgcattaagcactatatgtccaattttatat----cgtattcaaa-ctcatcttcaaattttgctgctttcacttcccaattgtctagt |
18255595 |
T |
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| Q |
224 |
gtagagaatttaaagaatgtatagccaatgatctag |
259 |
Q |
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| T |
18255596 |
gtagagaatttaaagaatgtatagccaatgatctag |
18255631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 247
Target Start/End: Original strand, 44138887 - 44138941
Alignment:
| Q |
193 |
tttttctgctttcacttcccaattgtctagtgtagagaatttaaagaatgtatag |
247 |
Q |
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| T |
44138887 |
tttttctgctaacacctcccaattgtctagtgtagagattccaaagaatgtatag |
44138941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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