View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10751_low_16 (Length: 267)
Name: NF10751_low_16
Description: NF10751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10751_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 11 - 247
Target Start/End: Complemental strand, 48471116 - 48470880
Alignment:
| Q |
11 |
cagagataaaatcaacacttttcacacacctcttatgtgcttttgctttcataaattccacagactacagcatctttataaatgactctgagtattatag |
110 |
Q |
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| T |
48471116 |
cagagataaaatcaacacttttcacacacctcttatgtgcttttgctttcataaattccacagactacagcatctttataaatgactctgagtattatag |
48471017 |
T |
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| Q |
111 |
attcgagtccttcaccagaagagtaaagcttcaaaacccatctgttacatctcttttatcaatctacactggaggagaaaattcttcactttttaactca |
210 |
Q |
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| T |
48471016 |
attcgcgtccttcaccagaagagtaaagcttcaaaacccatctgttacatctcttttatcaatctacactggaggacaaaattcttcactttttaactca |
48470917 |
T |
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| Q |
211 |
ttgataaaccaatcttcttatacaaaatctttcattg |
247 |
Q |
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| T |
48470916 |
ttgataaaccaatcttcttatagaaaatctttcattg |
48470880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 48479476 - 48479238
Alignment:
| Q |
13 |
gagataaaatcaacacttttcacacacctcttatgtgcttttgctttcataaattccacagactacagcatctttataaatgactctgagtattatagat |
112 |
Q |
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| T |
48479476 |
gagataaaatcaacacttttcacacacctcttatgtgcttttgctttcataaattccacagactacagcatctttataaatgactctgagtattctaaat |
48479377 |
T |
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| Q |
113 |
tcgagtccttcaccagaagagtaaagcttcaaaacccatctgttacatctcttttatcaatctacactggaggagaaaattcttcactttttaactcatt |
212 |
Q |
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| T |
48479376 |
tcgactccttcaccaccagagtaaagcttcaaaatccttctgttacatctcttctatcaatctacactggaggagaaaattcttcactttttaactcgtt |
48479277 |
T |
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| Q |
213 |
gataaaccaatcttcttatacaaaatctttcattgattc |
251 |
Q |
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| T |
48479276 |
gataaaccaatcttcttatagaaaatctttcattgattc |
48479238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 48882868 - 48883106
Alignment:
| Q |
13 |
gagataaaatcaacacttttcacacacctcttatgtgcttttgctttcataaattccacagactacagcatctttataaatgactctgagtattatagat |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| || || |
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| T |
48882868 |
gagataaaatcaacacttttcacacacctcttatgtgcttttgctttcataaattccacagactacatcatctttacaaatgactctgagtattctaaat |
48882967 |
T |
|
| Q |
113 |
tcgagtccttcaccagaagagtaaagcttcaaaacccatctgttacatctcttttatcaatctacactggaggagaaaattcttcactttttaactcatt |
212 |
Q |
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| T |
48882968 |
tcgactccttcaccaccagagtaaagcttcaaaatccttctgttacatctcttttatcaatctacactggaggacaaaattcttcactttttaactcatt |
48883067 |
T |
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| Q |
213 |
gataaaccaatcttcttatacaaaatctttcattgattc |
251 |
Q |
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| T |
48883068 |
gttaaaccaatcttcttatagaaaatctttcattgattc |
48883106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 28 - 252
Target Start/End: Complemental strand, 48487930 - 48487706
Alignment:
| Q |
28 |
cttttcacacacctcttatgtgcttttgctttcataaattccacagactacagcatctttataaatgactctgagtattatagattcgagtccttcacca |
127 |
Q |
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|||||||||||||| ||||||||||||||||| ||||| |||||| |||||| |||||||| || ||||| | | | |||| |||| |||| |
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| T |
48487930 |
cttttcacacaccttttatgtgcttttgcttttataaactccacaaactacaatatctttattaactcatctgaagaacacaaattctccacctttacca |
48487831 |
T |
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| Q |
128 |
gaagagtaaagcttcaaaacccatctgttacatctcttttatcaatctacactggaggagaaaattcttcactttttaactcattgataaaccaatcttc |
227 |
Q |
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| T |
48487830 |
atacagtaaagcttcaaaatccatctgttacaactcttctttcaatctacaccaaaacagaaaactcttcagttttttcctcactgataaaccaatcttc |
48487731 |
T |
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| Q |
228 |
ttatacaaaatctttcattgattct |
252 |
Q |
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| | | |||||||||||||||||| |
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| T |
48487730 |
taacaggaaatctttcattgattct |
48487706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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