View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10751_low_20 (Length: 248)
Name: NF10751_low_20
Description: NF10751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10751_low_20 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 16 - 248
Target Start/End: Complemental strand, 8293913 - 8293681
Alignment:
| Q |
16 |
caatatgatgtggaagggatattcatattacacacataaaactaatagcagtaactcataactatataaaaacaacagaaacgtgtacattgcagaaact |
115 |
Q |
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| T |
8293913 |
caatatgatgtggaagggatattcatattacacacataaaactaatagcagtaactcataactatataaaaacaacagaaacgtgtacattgcagaaact |
8293814 |
T |
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| Q |
116 |
gataatcaatttaatcgtcacgagagaaaacaatactaacctaactattaacatactaatattctacatttgttattnnnnnnntagcacctaaaccaga |
215 |
Q |
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| T |
8293813 |
gataatcaatttaatcgtcacgagagaaaacaatactaacctaactattaacatactaatattctacatttgttattaaaaaaatagcacctaaaccaga |
8293714 |
T |
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| Q |
216 |
gatgcaattaattatatggagatcaaatgcaca |
248 |
Q |
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| T |
8293713 |
gatgcaattaattatatggagatcaaatgcaca |
8293681 |
T |
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