View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10751_low_22 (Length: 247)

Name: NF10751_low_22
Description: NF10751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10751_low_22
NF10751_low_22
[»] chr2 (4 HSPs)
chr2 (118-240)||(32483698-32483820)
chr2 (122-206)||(12874736-12874820)
chr2 (119-186)||(35926777-35926844)
chr2 (122-186)||(981053-981117)
[»] chr5 (4 HSPs)
chr5 (133-206)||(17047971-17048044)
chr5 (122-206)||(13657605-13657689)
chr5 (122-193)||(20510424-20510495)
chr5 (148-204)||(22297880-22297936)
[»] chr7 (2 HSPs)
chr7 (122-205)||(21657353-21657436)
chr7 (122-206)||(19105311-19105395)
[»] chr6 (1 HSPs)
chr6 (118-172)||(13340593-13340647)
[»] chr8 (3 HSPs)
chr8 (121-206)||(9861623-9861708)
chr8 (122-199)||(36874366-36874443)
chr8 (118-186)||(31212365-31212433)
[»] chr1 (1 HSPs)
chr1 (122-199)||(23485795-23485872)


Alignment Details
Target: chr2 (Bit Score: 91; Significance: 3e-44; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 118 - 240
Target Start/End: Original strand, 32483698 - 32483820
Alignment:
Q  118 cccataaaatattcgttaggcttttgatttctctaaaaaatttcatttatgaaatcagcctctactctacgttgagtattacaatagaggagctagtgaa 217  Q
    |||||||||||||  ||||||||||| |||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  32483698 cccataaaatattttttaggcttttggtttctctaaaaattttcatttatgaaatcagtctctactctacattgagtattacaatagaggagctagtgaa 32483797  T
Q  218 tactgttgagtaattgccctttg 240  Q
    ||||||||| |||||| ||||||    
T  32483798 tactgttgaataattgtcctttg 32483820  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 122 - 206
Target Start/End: Original strand, 12874736 - 12874820
Alignment:
Q  122 taaaatattcgttaggcttttgatttctctaaaaaatttcatttatgaaatcagcctctactctacgttgagtattacaatagag 206  Q
    |||||||| | |||| |||||| | ||||||||||||||||| |||||||| || |||| |||||| |||||| ||||| |||||    
T  12874736 taaaatatcccttagacttttggtctctctaaaaaatttcatctatgaaattagtctctgctctacattgagtcttacactagag 12874820  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 186
Target Start/End: Original strand, 35926777 - 35926844
Alignment:
Q  119 ccataaaatattcgttaggcttttgatttctctaaaaaatttcatttatgaaatcagcctctactcta 186  Q
    ||||||||||||  ||||| ||||  || |||||||| |||||||||||||||| || ||||||||||    
T  35926777 ccataaaatattttttaggtttttagttcctctaaaacatttcatttatgaaattagtctctactcta 35926844  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 186
Target Start/End: Complemental strand, 981117 - 981053
Alignment:
Q  122 taaaatattcgttaggcttttgatttctctaaaaaatttcatttatgaaatcagcctctactcta 186  Q
    |||||||||| ||||||||||| |  ||||||||  ||||||||||||||| || |||| |||||    
T  981117 taaaatattctttaggcttttggtccctctaaaatttttcatttatgaaattagtctctgctcta 981053  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 206
Target Start/End: Complemental strand, 17048044 - 17047971
Alignment:
Q  133 ttaggcttttgatttctctaaaaaatttcatttatgaaatcagcctctactctacgttgagtattacaatagag 206  Q
    ||||||||||| || |||||||||||||||| ||| |||| || |||| |||||| |||||||||||| |||||    
T  17048044 ttaggcttttggttcctctaaaaaatttcatctattaaattagtctctgctctacattgagtattacagtagag 17047971  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 122 - 206
Target Start/End: Original strand, 13657605 - 13657689
Alignment:
Q  122 taaaatattcgttaggcttttgatttctctaaaaaatttcatttatgaaatcagcctctactctacgttgagtattacaatagag 206  Q
    |||||||||| |||| |||||| | ||||||||||||||||| |||||||| ||  | | |||||| |||||||||||| |||||    
T  13657605 taaaatattctttagacttttggtctctctaaaaaatttcatctatgaaattagtttttgctctacattgagtattacactagag 13657689  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 193
Target Start/End: Complemental strand, 20510495 - 20510424
Alignment:
Q  122 taaaatattcgttaggcttttgatttctctaaaaaatttcatttatgaaatcagcctctactctacgttgag 193  Q
    |||||||||  |||||||||||||  ||||||| ||||||||| ||||||| |||| || |||||| |||||    
T  20510495 taaaatattttttaggcttttgatccctctaaacaatttcattcatgaaattagcccctgctctacattgag 20510424  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 204
Target Start/End: Complemental strand, 22297936 - 22297880
Alignment:
Q  148 ctctaaaaaatttcatttatgaaatcagcctctactctacgttgagtattacaatag 204  Q
    ||||||||  ||||||||||||||| || |||  |||||| ||||||||||||||||    
T  22297936 ctctaaaatttttcatttatgaaattagtctcagctctacattgagtattacaatag 22297880  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 205
Target Start/End: Original strand, 21657353 - 21657436
Alignment:
Q  122 taaaatattcgttaggcttttgatttctctaaaaaatttcatttatgaaatcagcctctactctacgttgagtattacaataga 205  Q
    |||||||||| |||| |||||| ||  || ||||| ||||||||||||||| || |||| |||||| |||||||||||| ||||    
T  21657353 taaaatattctttagacttttggttcttcaaaaaattttcatttatgaaattagtctctgctctacattgagtattacattaga 21657436  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 206
Target Start/End: Original strand, 19105311 - 19105395
Alignment:
Q  122 taaaatattcgttaggcttttgatttctctaaaaaatttcatttatgaaatcagcctctactctacgttgagtattacaatagag 206  Q
    |||||||||| ||||||||||| |  ||||| ||  ||||||||||||||| || |  | |||||| |||||||||||| |||||    
T  19105311 taaaatattctttaggcttttggtccctctataatttttcatttatgaaattagtcaatgctctacattgagtattacactagag 19105395  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 13340647 - 13340593
Alignment:
Q  118 cccataaaatattcgttaggcttttgatttctctaaaaaatttcatttatgaaat 172  Q
    |||||||||||||| ||||| ||||| |  |||||||||||||||||||||||||    
T  13340647 cccataaaatattctttaggtttttggtccctctaaaaaatttcatttatgaaat 13340593  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 206
Target Start/End: Original strand, 9861623 - 9861708
Alignment:
Q  121 ataaaatattcgttaggcttttgatttctctaaaaaatttcatttatgaaatcagcctctactctacgttgagtattacaatagag 206  Q
    ||||||||||| ||||||||||| |  ||||||||  ||||||||||||||| || | || |||||| || ||||||||| |||||    
T  9861623 ataaaatattctttaggcttttggtccctctaaaatttttcatttatgaaattagtccctgctctacattaagtattacactagag 9861708  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 199
Target Start/End: Original strand, 36874366 - 36874443
Alignment:
Q  122 taaaatattcgttaggcttttgatttctctaaaaaatttcatttatgaaatcagcctctactctacgttgagtattac 199  Q
    |||||||||| ||||| ||||| |  ||||||||||| | ||||||||||| || ||||||||||| |||| ||||||    
T  36874366 taaaatattccttaggtttttggtccctctaaaaaatgttatttatgaaattagtctctactctacattgaatattac 36874443  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 186
Target Start/End: Original strand, 31212365 - 31212433
Alignment:
Q  118 cccataaaatattcgttaggcttttgatttctctaaaaaatttcatttatgaaatcagcctctactcta 186  Q
    |||||||||||||| ||||||||||| |  ||||||||||||  ||||||||||| || |||| |||||    
T  31212365 cccataaaatattctttaggcttttggtccctctaaaaaattctatttatgaaattagtctctgctcta 31212433  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 199
Target Start/End: Complemental strand, 23485872 - 23485795
Alignment:
Q  122 taaaatattcgttaggcttttgatttctctaaaaaatttcatttatgaaatcagcctctactctacgttgagtattac 199  Q
    |||||||||| |||||  |||  ||||||||| |||||||||||||||| | || |||  |||||| |||||||||||    
T  23485872 taaaatattctttaggtatttagtttctctaacaaatttcatttatgaatttagtctccgctctacattgagtattac 23485795  T

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