View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10751_low_26 (Length: 242)
Name: NF10751_low_26
Description: NF10751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10751_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 4303384 - 4303623
Alignment:
| Q |
1 |
ttacaacttacgaatccaaaattactaacagaaagatagaatagcagtaactatgttgtgagaactccnnnnnnnngcagtgataataacaaaatccagc |
100 |
Q |
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| T |
4303384 |
ttacaacttacgaatccaaaattactaacagaaagatagaatagcagcaactatgttgtgagaactccaataaaaagcagtgataataacaaaatccagc |
4303483 |
T |
|
| Q |
101 |
tgcaaaacggtggacttcatttgaagtgggcgtcggaacctgttgacaaactatttggagtggtctgtccagctctatacattcaaattaggtgcttagc |
200 |
Q |
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| T |
4303484 |
tgcaaaacggtggacttcatttgaagtgggcatcggaacctgttgacaaactatttggagtggtctgtccagctctatacattcaaatttggtgcttagc |
4303583 |
T |
|
| Q |
201 |
ttaagtaatcaatcactggccatgaaaactaattcctatg |
240 |
Q |
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||| |||||||||||||||||||||||||||||||||||| |
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| T |
4303584 |
ttaggtaatcaatcactggccatgaaaactaattcctatg |
4303623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 1e-46; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 27536850 - 27537048
Alignment:
| Q |
1 |
ttacaacttacgaatccaaaattactaacagaaagatagaatagcagtaactatgttgtgagaactccnnnnnnnngcagtgataataacaaaatccagc |
100 |
Q |
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|||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| | || ||||||||| ||||||||| | |
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| T |
27536850 |
ttacaacttacgaatccaaaattattaacataaagatagaatagcagtaactatattgtgagaactacaataaaaagccgtgataatagcaaaatccatc |
27536949 |
T |
|
| Q |
101 |
tgcaaaacggtggacttcatttgaagtgggcgtcggaacctgttgacaaactatttggagtggtctgtccagctctatacattcaaattaggtgcttag |
199 |
Q |
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| T |
27536950 |
tgcaaaactatggacttaatttgaagtggggacaggaacctgatgacaaactgttttgagtagtctgtccagctctatacattcaaatttgctgcttag |
27537048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 15643378 - 15643506
Alignment:
| Q |
1 |
ttacaacttacgaatccaaaattactaacagaaagatagaatagcagtaactatgttgtgagaactccnnnnnnnngcagtgataataacaaaatccagc |
100 |
Q |
| |
|
|||||||||||||||||||||||| | ||| ||| ||||||| ||||||||||| ||||||||||| | |||||||||||| ||||||||| | |
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| T |
15643378 |
ttacaacttacgaatccaaaattattgacataaa-atagaatcgcagtaactatattgtgagaactacaataaaaagcagtgataatagcaaaatccatc |
15643476 |
T |
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| Q |
101 |
tgcaaaacggtggacttcatttgaagtggg |
130 |
Q |
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|||||||| ||||||| |||||||||||| |
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| T |
15643477 |
tgcaaaactatggacttaatttgaagtggg |
15643506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 15654685 - 15654811
Alignment:
| Q |
1 |
ttacaacttacgaatccaaaattactaacagaaagatagaatagcagtaactatgttgtgagaactccnnnnnnnngcagtgataataacaaaatccagc |
100 |
Q |
| |
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|||||||||| ||||||||||||| ||||| ||| ||||||||||||||||||| ||||||||||| | ||||||||||| ||||||||| | |
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| T |
15654685 |
ttacaacttaagaatccaaaattattaacataaa-atagaatagcagtaactatattgtgagaactacaataaaaaacagtgataatagcaaaatccatc |
15654783 |
T |
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| Q |
101 |
tgcaaaacggtggacttcatttgaagtg |
128 |
Q |
| |
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| |||||| ||||||| |||||||||| |
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| T |
15654784 |
tacaaaactatggacttaatttgaagtg |
15654811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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