View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10751_low_27 (Length: 240)
Name: NF10751_low_27
Description: NF10751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10751_low_27 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 14464353 - 14464131
Alignment:
| Q |
18 |
gtcccagtcaaacataaattacatcaacataaattattttgcatgggttattatttatcgtttcgggtacaatggaggagttagttttatctggttgata |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
14464353 |
gtcccagtcaaacataaattacatcaacataaattattttgcaggggttattatttatcgtttcgggtacaatgcaggagttagttttatctggttgata |
14464254 |
T |
|
| Q |
118 |
aaataaattttaattggggttgttgtaattgttttgttgatttaatgagacgaaatgttaatatgtgtatttatatatatttgaatcttaaagattatgt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14464253 |
aaataaattttaattggggttgttgtaattgttttgttgatttaatgagacgaaatgttaatatgtgtatttatatatatttgaatcttaaagattatgt |
14464154 |
T |
|
| Q |
218 |
ttgagttcatatcttctttaact |
240 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
14464153 |
ttgagttcatatcttctttaact |
14464131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 159 - 237
Target Start/End: Original strand, 15889031 - 15889105
Alignment:
| Q |
159 |
ttaatgagacgaaatgttaatatgtgtatttatatatatttgaatcttaaagattatgtttgagttcatatcttcttta |
237 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
15889031 |
ttaatgagatgaaatgtaaatatgtgtatttatac----ttgaatcttaaagattatgtgtgagttcatatcctcttta |
15889105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 156 - 237
Target Start/End: Complemental strand, 19723235 - 19723154
Alignment:
| Q |
156 |
gatttaatgagacgaaatgttaatatgtgtatttatatatatttgaatcttaaagattatgtttgagttcatatcttcttta |
237 |
Q |
| |
|
|||||||||||| || || | |||||||||||| ||||||| ||||||| ||||||||||| ||||||||||||| |||||| |
|
|
| T |
19723235 |
gatttaatgagatgagatttgaatatgtgtattgatatatacttgaatcctaaagattatgcttgagttcatatcctcttta |
19723154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University