View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10751_low_3 (Length: 430)
Name: NF10751_low_3
Description: NF10751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10751_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-159; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 50 - 418
Target Start/End: Complemental strand, 8456639 - 8456271
Alignment:
| Q |
50 |
attatcatattaaggaggtatgacaacatgagaatttacctgaaaaagtatttcctttccatctcgcaaaactgcagctggctcttggtgtgaagaaagg |
149 |
Q |
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| T |
8456639 |
attatcatattaaggaggtatgacaacatgagactttacctgaaaaagtatttcctttccatctcgcaaaactgcatctggcccttggtgtgaagaaaga |
8456540 |
T |
|
| Q |
150 |
ttgatgacttnnnnnnnnnnnnnnnnggattgatgagaagatgagctgaatagtatatagagtaattgaaatatgatctaaccaataacatttaagcttg |
249 |
Q |
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| T |
8456539 |
ttgatgacttaaaaataaaataaaaaggattgatgagaagatgagctcaatagtatatagagtaattgaaatatgatctaaccaataacatttaagcttg |
8456440 |
T |
|
| Q |
250 |
atcctagtcaaagatacttgaaaaaagaattaggtaaaggaaattaagcaagtcccctaagttagtagaacaaggaattcaatattcaagattgtataaa |
349 |
Q |
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|| |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8456439 |
atgctagtcaaagatacttgaaaaaagaattggctaaaggaaattaagcaagtcccctaagttagtagaacaaggaattcaatattcaagattgtataaa |
8456340 |
T |
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| Q |
350 |
atcaattttcaagcactcacctgagacctcgttattgtgtgtgtgagtttcaggtggtttttgtccctt |
418 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8456339 |
atcaattttcacgcactcacctgagacctcgttattgtgtgtgtgagtttcaggtggtttttgtccctt |
8456271 |
T |
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