View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10751_low_30 (Length: 239)
Name: NF10751_low_30
Description: NF10751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10751_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 17057814 - 17058036
Alignment:
| Q |
1 |
aaatcaaatcatgcaccaaataactagggctaagaatcaaacgctatagatattgaaacctagggcttaccaaaggattgcttatcaaagaattatggag |
100 |
Q |
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| T |
17057814 |
aaatcaaataatgcaccaaataactagggctaagaatcaaacgctatagatattggaacctagggcttaccaaaggattgcttatcaaagaattgtggag |
17057913 |
T |
|
| Q |
101 |
gctatattcatgcaaaatccatccaccatcttgagaagtgtcactcttctcaaaacgaaaacgttttttcatgccgaggatttggttcttgtctttggcg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
17057914 |
gctatattcatgcaaaatccatccaccatcttgagaagtgtcactcttctcaaaacgaaaacgttttttcatgccaaggatttggttcttgtctttggcg |
17058013 |
T |
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| Q |
201 |
aatatatttttcccagcatcttc |
223 |
Q |
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||||||||||| |||| |||||| |
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| T |
17058014 |
aatatattttttccagaatcttc |
17058036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 65 - 189
Target Start/End: Complemental strand, 6044738 - 6044614
Alignment:
| Q |
65 |
gcttaccaaaggattgcttatcaaagaattatggaggctatattcatgcaaaatccatccaccatcttgagaagtgtcactcttctcaaaacgaaaacgt |
164 |
Q |
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||||||| ||| |||| | |||||||| | || ||||||||||||||||| |||||||||||||||| |||||||| |||||||||||| | |||||| |
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| T |
6044738 |
gcttaccgaagcattgttaatcaaagatatgtgaaggctatattcatgcaagatccatccaccatctttagaagtgttactcttctcaaagcagaaacgt |
6044639 |
T |
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| Q |
165 |
tttttcatgccgaggatttggttct |
189 |
Q |
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| T |
6044638 |
tttttcagacctagggtttggttct |
6044614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 65 - 192
Target Start/End: Original strand, 22598561 - 22598688
Alignment:
| Q |
65 |
gcttaccaaaggattgcttatcaaagaattatggaggctatattcatgcaaaatccatccaccatcttgagaagtgtcactcttctcaaaacgaaaacgt |
164 |
Q |
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||||||||||| ||| ||||||||||| || | ||||||||||||||||| |||||| ||||||| || ||||| |||| |||||||| ||||||| | |
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| T |
22598561 |
gcttaccaaagaatttcttatcaaagatttgtcaaggctatattcatgcaagatccattcaccatcatggtaagtgccactattctcaaatcgaaaacat |
22598660 |
T |
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| Q |
165 |
tttttcatgccgaggatttggttcttgt |
192 |
Q |
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||||||| || | || ||||||||||| |
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| T |
22598661 |
tttttcacaccaatgagttggttcttgt |
22598688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 65 - 169
Target Start/End: Original strand, 48060055 - 48060159
Alignment:
| Q |
65 |
gcttaccaaaggattgcttatcaaagaattatggaggctatattcatgcaaaatccatccaccatcttgagaagtgtcactcttctcaaaacgaaaacgt |
164 |
Q |
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||||||||||| |||| | |||||||| || | ||| ||||||||||||| |||||| |||| || || |||||| ||||||| |||| ||||||||| |
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| T |
48060055 |
gcttaccaaagtattgttaatcaaagatttgtcaaggttatattcatgcaagatccatgcaccgtcatggaaagtgttactcttcccaaagcgaaaacgt |
48060154 |
T |
|
| Q |
165 |
ttttt |
169 |
Q |
| |
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||||| |
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| T |
48060155 |
ttttt |
48060159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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