View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10751_low_34 (Length: 230)
Name: NF10751_low_34
Description: NF10751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10751_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 102; Significance: 8e-51; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 202846 - 202737
Alignment:
| Q |
1 |
aagtctccattaatccaaaacacaagctcaatcaatgaaagattcaaaatcaaattttacaacattagaatttagaatcaaacatatttccttccttaat |
100 |
Q |
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| T |
202846 |
aagtctccattaatccaaaacacaggctcaatcaatgaaagattcaaaatcaaattttacaactttagaatttagaatcaaacatatttccttccttaat |
202747 |
T |
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| Q |
101 |
ttagaatcaa |
110 |
Q |
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|||||||||| |
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| T |
202746 |
ttagaatcaa |
202737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 144 - 230
Target Start/End: Complemental strand, 202700 - 202614
Alignment:
| Q |
144 |
ctcttacacacagaatcaaactaatattcaaaatcaactatgcttcaatcaatgaagcatagttggatcaaagtttcggttggatac |
230 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
202700 |
ctcttacacacagaatcaaactaatattcaaaatcaactatgcttcaatcaatgaagcatagttggatcaaagtttcggttggatac |
202614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 6908132 - 6908223
Alignment:
| Q |
1 |
aagtctccattaatccaaaacacaagctcaatcaatgaaagattcaaaatcaaattttacaacattagaatttagaatcaaacatatttcct |
92 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6908132 |
aagtctccattaatccaaaacacaggctcaatcaatgaaagattcaaaatcaaattttacaacattagaatttagaatcaaacatatttcct |
6908223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 144 - 230
Target Start/End: Original strand, 6908287 - 6908373
Alignment:
| Q |
144 |
ctcttacacacagaatcaaactaatattcaaaatcaactatgcttcaatcaatgaagcatagttggatcaaagtttcggttggatac |
230 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6908287 |
ctcttacacacataatcaaactaatattcaaaatcaactatgcttcaatcaatgaagcatagttggatcaaagtttcggttggatac |
6908373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 230
Target Start/End: Original strand, 44924311 - 44924346
Alignment:
| Q |
195 |
atgaagcatagttggatcaaagtttcggttggatac |
230 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
44924311 |
atgaagcatagttggatcaaagtttcggttggatac |
44924346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 110
Target Start/End: Original strand, 6908225 - 6908253
Alignment:
| Q |
82 |
acatatttccttccttaatttagaatcaa |
110 |
Q |
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| T |
6908225 |
acatatttccttccttaatttagaatcaa |
6908253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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