View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10751_low_36 (Length: 229)
Name: NF10751_low_36
Description: NF10751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10751_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 128; Significance: 3e-66; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 7 - 134
Target Start/End: Original strand, 4303071 - 4303198
Alignment:
| Q |
7 |
ccaggttgggcatactttctcaatacttagaaaatgaagatataacaactaattcaattggaacccttagaaggcactaataaattgaggtttctcccat |
106 |
Q |
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| T |
4303071 |
ccaggttgggcatactttctcaatacttagaaaatgaagatataacaactaattcaattggaacccttagaaggcactaataaattgaggtttctcccat |
4303170 |
T |
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| Q |
107 |
aagatctaacaaactcgttatattcaat |
134 |
Q |
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| T |
4303171 |
aagatctaacaaactcgttatattcaat |
4303198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 19 - 171
Target Start/End: Original strand, 4567657 - 4567809
Alignment:
| Q |
19 |
tactttctcaatacttagaaaatgaagatataacaactaattcaattggaacccttagaaggcactaataaattgaggtttctcccataagatctaacaa |
118 |
Q |
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| T |
4567657 |
tactttctgaatactaagaaaatgaagatataacaactcattctatatgaacccctagaaggaactaatagattgagttatctcccataaaacctaacat |
4567756 |
T |
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| Q |
119 |
actcgttatattcaatatatgataatattcttcttagcaaaagtggtacttaa |
171 |
Q |
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| T |
4567757 |
actagctatattcaatatatgataatactcttcttagtaaaagtggtacttaa |
4567809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 180 - 229
Target Start/End: Original strand, 4303197 - 4303246
Alignment:
| Q |
180 |
atcagtaggatgagtacttaaaggtttcaaaagtggcgctgaatccctaa |
229 |
Q |
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| T |
4303197 |
atcagtaggatgagtacttaaaggtttcaaaagtggcgctgaatccctaa |
4303246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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