View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10751_low_37 (Length: 228)
Name: NF10751_low_37
Description: NF10751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10751_low_37 |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 5e-80; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 67 - 217
Target Start/End: Original strand, 17057658 - 17057808
Alignment:
| Q |
67 |
gtaacttacaggtatggtgattgccgcaggttcaggaacgactatctttcttggtttatcttgtgcaacgatatttttgcttacaggtaagtgagtgcaa |
166 |
Q |
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| T |
17057658 |
gtaacttacaggtatggtgattgccgcaggttcaggaacgactatctttcttggtttatcttgtgcaacgatatttttgcttacaggtaagtgagtgcaa |
17057757 |
T |
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| Q |
167 |
ttctttctaaatctgcatagaacataattattgtcctgcaaaaaacaagat |
217 |
Q |
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| T |
17057758 |
ttctttctaaatctgcatagaacataattattgtcctgcaaaaaacaagat |
17057808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 17057616 - 17057661
Alignment:
| Q |
1 |
caataataatacagtataggaataaaaccatcaaatcttttggtaa |
46 |
Q |
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| T |
17057616 |
caataataatacagtataggaataaaaccatcaaatcttttggtaa |
17057661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 211
Target Start/End: Complemental strand, 6044938 - 6044892
Alignment:
| Q |
165 |
aattctttctaaatctgcatagaacataattattgtcctgcaaaaaa |
211 |
Q |
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| T |
6044938 |
aattctttctgaatttgcatagaacataattgttgtcctgcaaaaaa |
6044892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 211
Target Start/End: Original strand, 22598442 - 22598487
Alignment:
| Q |
166 |
attctttctaaatctgcatagaacataattattgtcctgcaaaaaa |
211 |
Q |
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| T |
22598442 |
attctttctaaatctgcatagaacataattgttggcctacaaaaaa |
22598487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 211
Target Start/End: Original strand, 17637411 - 17637460
Alignment:
| Q |
162 |
tgcaattctttctaaatctgcatagaacataattattgtcctgcaaaaaa |
211 |
Q |
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| T |
17637411 |
tgcaattcttttgaaatctgcatagaacataattgttggcctgcaaaaaa |
17637460 |
T |
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