View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10751_low_40 (Length: 205)
Name: NF10751_low_40
Description: NF10751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10751_low_40 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 43561726 - 43561930
Alignment:
| Q |
1 |
cgtggagacaacgttgttggtcttggaagcatgtgcgctatttcggggaagttcagaattgctgaatgaccctttatactcaaagcagcaacatcatgcg |
100 |
Q |
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| T |
43561726 |
cgtggagacaacgttgttggtcttggaagcatgtgcgctatttcggggaagttaagaattgctgaatgaccctttatactcaaagcagcaacatcatgcg |
43561825 |
T |
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| Q |
101 |
ctctagctgccatttcaggagtagcgtaagttccaagccagattcgtgattttttgcgaggttcgcggatttctgatacccattttccccagcttcgcat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
43561826 |
ctctagctgccatttcaggagtagcgtaagttccaagccagattcgtgattttttgcgaggttcgcggatttccgatacccattttccccagcttcgcat |
43561925 |
T |
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| Q |
201 |
tcgaa |
205 |
Q |
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||||| |
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| T |
43561926 |
tcgaa |
43561930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 152
Target Start/End: Original strand, 36077744 - 36077810
Alignment:
| Q |
86 |
cagcaacatcatgcgctctagctgccatttcaggagtagcgtaagttccaagccagattcgtgattt |
152 |
Q |
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|||| |||||||| ||| ||||||||||||| || |||| ||||||||| ||||| |||| |||||| |
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| T |
36077744 |
cagctacatcatgtgctatagctgccatttctggtgtagggtaagttcctagccatattcttgattt |
36077810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 82 - 197
Target Start/End: Complemental strand, 4268763 - 4268648
Alignment:
| Q |
82 |
aaagcagcaacatcatgcgctctagctgccatttcaggagtagcgtaagttccaagccagattcgtgattttttgcgaggttcgcggatttctgataccc |
181 |
Q |
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| T |
4268763 |
aaagctgctacatcgtgtgctctagctgccatttctggtgttgagaatgttcctagccagattcttgattttttgcgtggttcgcggatttcagataccc |
4268664 |
T |
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| Q |
182 |
attttccccagcttcg |
197 |
Q |
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| T |
4268663 |
attttccccagtttcg |
4268648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 60 - 155
Target Start/End: Original strand, 505520 - 505615
Alignment:
| Q |
60 |
tgctgaatgaccctttatactcaaagcagcaacatcatgcgctctagctgccatttcaggagtagcgtaagttccaagccagattcgtgatttttt |
155 |
Q |
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| T |
505520 |
tgctgaatgaccctttatagctaaagcagctacatcatgtgctctagctgccatttcagctgtagggtatgttccaagccatattcttgatttttt |
505615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 61 - 191
Target Start/End: Original strand, 16357796 - 16357926
Alignment:
| Q |
61 |
gctgaatgaccctttatactcaaagcagcaacatcatgcgctctagctgccatttcaggagtagcgtaagttccaagccagattcgtgattttttgcgag |
160 |
Q |
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||||||||||||||||| |||||||| |||||||| ||||||||||||||||||| |||| ||| ||||||||||| |||| ||| || || | | |
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| T |
16357796 |
gctgaatgaccctttatggctaaagcagctacatcatgagctctagctgccatttcagctgtagggtatgttccaagccatattcttgacttctttcttg |
16357895 |
T |
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| Q |
161 |
gttcgcggatttctgatacccattttcccca |
191 |
Q |
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| T |
16357896 |
gctcacgaatttcagatacccattttcccca |
16357926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 202
Target Start/End: Complemental strand, 33589286 - 33589193
Alignment:
| Q |
109 |
gccatttcaggagtagcgtaagttccaagccagattcgtgattttttgcgaggttcgcggatttctgatacccattttccccagcttcgcattc |
202 |
Q |
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| T |
33589286 |
gccatttcagccgtagcatatgttccaagccagattcgacttttctttcgtggttcacggatttcggatacccattttccccatgttcgcattc |
33589193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 202
Target Start/End: Complemental strand, 33602408 - 33602312
Alignment:
| Q |
106 |
gctgccatttcaggagtagcgtaagttccaagccagattcgtgattttttgcgaggttcgcggatttctgatacccattttccccagcttcgcattc |
202 |
Q |
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| T |
33602408 |
gctgccatttcagcggttgcgaatgttcctagccagattcggtttttctttcgtggttctcggatttcagaaacccattttccccatgttcgcattc |
33602312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 191
Target Start/End: Complemental strand, 71116 - 71010
Alignment:
| Q |
85 |
gcagcaacatcatgcgctctagctgccatttcaggagtagcgtaagttccaagccagattcgtgattttttgcgaggttcgcggatttctgatacccatt |
184 |
Q |
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|||||| | |||||||||||||| |||||||||| ||| | | |||| || ||||| || || ||||| || || || ||||||||||| || ||||| | |
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| T |
71116 |
gcagcagcgtcatgcgctctagcagccatttcagcagtggggaaagtgcctagccaaatccgcgatttcttacgtggctcgcggatttcggacacccact |
71017 |
T |
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| Q |
185 |
ttcccca |
191 |
Q |
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||||||| |
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| T |
71016 |
ttcccca |
71010 |
T |
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