View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10751_low_5 (Length: 399)
Name: NF10751_low_5
Description: NF10751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10751_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 34683787 - 34683403
Alignment:
| Q |
1 |
agaacaaaagtaattgaaactaaattgttgaaatttaaatagagatgggtaactaagatgacaccgagatttattctgattcagtcgcatatcctatctt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34683787 |
agaacaaaagtaattgaaactaaattgttgaaatttaaatagagatgggtaactaagatgacaccgagatttattctgattcagtcgcatatcctatctt |
34683688 |
T |
|
| Q |
101 |
gttacctacatctagtcctcgtgtttaatcatatgagattttcatccacaaaaattgaatctagatatataaagatgaaggagatagactcactaatgtg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
34683687 |
gttacctacatctagtcctcgtgtttaatcatatgagattttcatccacaaaaattgaatctagatatataaagatggaggagatagactcactaatgtg |
34683588 |
T |
|
| Q |
201 |
ggatgggaacaaggagctggagtgtactctttgccgaccctgccccgttgacatcccgtcagatctgagatattttgatggtggtgttgaatggcctcta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34683587 |
ggatgggaacaaggagctggagtgtactctttgccgaccctgccccgttgacatcccgtcagatctgagatattttgatggtggtgttgaatggcctcta |
34683488 |
T |
|
| Q |
301 |
ggtgtaggaccttcctcggcaaccttcttctttgacggcgaggaatagtatttgcgaagacactcaatacttaaatttgtatttg |
385 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34683487 |
ggtgtaggaccttcctcggcaaccttcttctttgacggcgaggaatagtatttgcgaagacactcaatacttaaatttgtatttg |
34683403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 26981460 - 26981076
Alignment:
| Q |
1 |
agaacaaaagtaattgaaactaaattgttgaaatttaaatagagatgggtaactaagatgacaccgagatttattctgattcagtcgcatatcctatctt |
100 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26981460 |
agaacaagagtaattgaaactaaattgttgaaatttaaagagagaagggtaactaagatgacaccgagatttattctgattcagtcgcatatcctatctt |
26981361 |
T |
|
| Q |
101 |
gttacctacatctagtcctcgtgtttaatcatatgagattttcatccacaaaaattgaatctagatatataaagatgaaggagatagactcactaatgtg |
200 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
26981360 |
gttacctacatctagtcctcttgtttaatcatatgagattttcatccacaaaaattgaatctagatatataaagatggaggagatagactcactaatgtg |
26981261 |
T |
|
| Q |
201 |
ggatgggaacaaggagctggagtgtactctttgccgaccctgccccgttgacatcccgtcagatctgagatattttgatggtggtgttgaatggcctcta |
300 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||| |
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| T |
26981260 |
ggatgggaacaaggagctggagtgtactttttgccgaccctgccccgttgacatctcctgtcatctgagatattttgatggtggtgttgaatggcctcta |
26981161 |
T |
|
| Q |
301 |
ggtgtaggaccttcctcggcaaccttcttctttgacggcgaggaatagtatttgcgaagacactcaatacttaaatttgtatttg |
385 |
Q |
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|
|||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
26981160 |
ggtgtaggaccttcgtcggcaatcttcttctttgacggcaaggaatagtatttgcgaacacactcaatacttaaatttgtatttg |
26981076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 59 - 216
Target Start/End: Original strand, 27082658 - 27082815
Alignment:
| Q |
59 |
tgacaccgagatttattctgattcagtcgcatatcctatcttgttacctaca--tctagtcctcgtgtttaatcatatgagattttcatccacaaaaatt |
156 |
Q |
| |
|
||||||||| ||||||| | ||||||||||||||||||||||||||| ||| |||||||||| ||||||| | |||||| |||| ||||| ||||| |
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| T |
27082658 |
tgacaccgaaatttatttcggttcagtcgcatatcctatcttgttaccaacatctctagtcctcatgtttaacc--atgagagtttcttccactaaaatg |
27082755 |
T |
|
| Q |
157 |
gaatctagatatataaagatgaaggagatagactcactaatgtgggatgggaacaaggag |
216 |
Q |
| |
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||||||||||||||||||| | ||||| |||||| |||||||||||||||||||||| |
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| T |
27082756 |
gaatctagatatataaagacagggaagataaactcaccaatgtgggatgggaacaaggag |
27082815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 27082143 - 27082189
Alignment:
| Q |
21 |
taaattgttgaaatttaaatagagatgggtaactaagatgacaccga |
67 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
27082143 |
taaattgttgaaatttaaagagagaagggtaactaagatgacaccga |
27082189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 83 - 128
Target Start/End: Complemental strand, 27022809 - 27022764
Alignment:
| Q |
83 |
agtcgcatatcctatcttgttacctacatctagtcctcgtgtttaa |
128 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||| ||||||| |
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|
| T |
27022809 |
agtcgcatatcctatctcgttaccaacatctagtcctcatgtttaa |
27022764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 268 - 343
Target Start/End: Complemental strand, 27022697 - 27022623
Alignment:
| Q |
268 |
agatattttgatggtggtgttgaatggcctctaggtgtaggaccttcctcggcaaccttcttctttgacggcgagg |
343 |
Q |
| |
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|||| ||| ||||||||||||||||||||||| |||| || ||||| | | ||||||||||||||||||||||| |
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| T |
27022697 |
agatctttggatggtggtgttgaatggcctctgagtgt-gggccttcgttgcaaaccttcttctttgacggcgagg |
27022623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 15 - 86
Target Start/End: Complemental strand, 30222324 - 30222250
Alignment:
| Q |
15 |
tgaaactaaattgttgaaatttaaatagagatg---ggtaactaagatgacaccgagatttattctgattcagtc |
86 |
Q |
| |
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|||| |||||||||||||||||||| ||||| | ||||| ||||||||||||||||||||||||| ||||||| |
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| T |
30222324 |
tgaatctaaattgttgaaatttaaagagagaagaagggtaagtaagatgacaccgagatttattctggttcagtc |
30222250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 133 - 177
Target Start/End: Complemental strand, 30219727 - 30219683
Alignment:
| Q |
133 |
atgagattttcatccacaaaaattgaatctagatatataaagatg |
177 |
Q |
| |
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||||||||||||||| | ||||||||||||||||||||||||||| |
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|
| T |
30219727 |
atgagattttcatcccctaaaattgaatctagatatataaagatg |
30219683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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