View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10752_low_1 (Length: 436)

Name: NF10752_low_1
Description: NF10752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10752_low_1
NF10752_low_1
[»] scaffold0050 (1 HSPs)
scaffold0050 (383-436)||(8131-8184)
[»] chr7 (1 HSPs)
chr7 (235-301)||(29500350-29500416)
[»] chr8 (1 HSPs)
chr8 (252-313)||(24779190-24779252)
[»] chr6 (1 HSPs)
chr6 (35-63)||(8084626-8084654)


Alignment Details
Target: scaffold0050 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 383 - 436
Target Start/End: Original strand, 8131 - 8184
Alignment:
Q  383 gtacataactaatgacagccgatttagaaataaaaatttcttccactcattcat 436  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||||||||    
T  8131 gtacataactaatgacaaccaatttagaaataaaaatttcttccactcattcat 8184  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 235 - 301
Target Start/End: Original strand, 29500350 - 29500416
Alignment:
Q  235 gattattctacatctcatttccacttattttaaaatatattactgatattacttccatgtttatttt 301  Q
    |||||||||| |||||||||||| |||| | |||||| |||||||| || |||||||||||||||||    
T  29500350 gattattctatatctcatttccatttatgtgaaaataaattactgacataacttccatgtttatttt 29500416  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 313
Target Start/End: Complemental strand, 24779252 - 24779190
Alignment:
Q  252 tttccacttattttaaaatatattactgatattacttccatgttta-ttttcgttatttattt 313  Q
    |||||| ||||||||||||| | || ||| |||||||||||||||| |||||||||| |||||    
T  24779252 tttccatttattttaaaataaactattgaaattacttccatgtttatttttcgttatatattt 24779190  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 63
Target Start/End: Original strand, 8084626 - 8084654
Alignment:
Q  35 aaaagtgaatgagaaagattaaattggat 63  Q
    |||||||||||||||||||||||||||||    
T  8084626 aaaagtgaatgagaaagattaaattggat 8084654  T

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