View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10752_low_2 (Length: 280)
Name: NF10752_low_2
Description: NF10752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10752_low_2 |
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| [»] chr7 (3 HSPs) |
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| [»] scaffold0003 (1 HSPs) |
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| [»] scaffold0076 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 19 - 280
Target Start/End: Complemental strand, 5902997 - 5902736
Alignment:
| Q |
19 |
ctgataagtcacaaatttggcacatttactctgccagtgctaagctagacgcttcaccggaagctgtctatggccttgaaatgtgcatgactggtttaga |
118 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5902997 |
ctgataagtcacaaatttggcacatttactctgctagtgctaagctagaagcttcaccggaagctgtctatggccttgaaatgtgcatgactggtttaga |
5902898 |
T |
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| Q |
119 |
taaagaaaaagcatctgtgtttttcaagacagaaggatcttcagccggtttgatgaccaagaattctggaatcaggaagatccttccaaaatctgacatt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5902897 |
taaagaaaaagcatctgtgtttttcaagacagaaggatcttcagccggtttgatgaccaagaattctggaatcaggaagatccttccaaaatctgacatt |
5902798 |
T |
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| Q |
219 |
tgtgactttgaatttgaaccttgcgggtactcaatgaatggaattgaaggaagtgcaatatc |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5902797 |
tgtgactttgaatttgaaccttgcgggtactcaatgaatggaattgaaggaagtgcaatatc |
5902736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 20 - 280
Target Start/End: Original strand, 5918841 - 5919102
Alignment:
| Q |
20 |
tgataagtcacaaatttggcacatttactctgccagtgctaagctagacgcttcaccggaagctgtctatggccttgaaatgtgcatgactggttta-ga |
118 |
Q |
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|||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || || |
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| T |
5918841 |
tgataagtcacaaatttggcacatatactctgctagtgctaagctagaagcttcaccggaagctgtctatggccttgaaatgtgcatgactggtctaaga |
5918940 |
T |
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| Q |
119 |
taaagaaaaagcatctgtgtttttcaagacagaaggatcttcagccggtttgatgaccaagaattctggaatcaggaagatccttccaaaatctgacatt |
218 |
Q |
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||||||||| ||||| || |||||||||||||| |||||| || | || |||||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
5918941 |
taaagaaaaggcatcggtctttttcaagacagataaatcttctgcagcttcgatgactgagaattctggaatcaggaagatccttccaaaatccgacata |
5919040 |
T |
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| Q |
219 |
tgtgactttgaatttgaaccttgcgggtactcaatgaatggaattgaaggaagtgcaatatc |
280 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
5919041 |
tgtgactttgaatttgaaccttgcggctactcaatgaatggaattgaaggaagtgcaatatc |
5919102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 19 - 280
Target Start/End: Original strand, 5912206 - 5912468
Alignment:
| Q |
19 |
ctgataagtcacaaatttggcacatttactctgccagtgctaagctagacgcttcaccggaagctgtctatggccttgaaatgtgcatgactggttta-g |
117 |
Q |
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||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || | |
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| T |
5912206 |
ctgataagtcacaaatttggcacatttactccgctagtgctaagctagaagcttcaccggaagctgtctatggccttgaaatgtgcatgactggtctaag |
5912305 |
T |
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| Q |
118 |
ataaagaaaaagcatctgtgtttttcaagacagaaggatcttcagccggtttgatgaccaagaattctggaatcaggaagatccttccaaaatctgacat |
217 |
Q |
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|||||||||| ||||| || |||||||||||||| |||||| || | || |||||| ||||||||||||||||||||||||| |||||||| ||||| |
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| T |
5912306 |
ataaagaaaaggcatcggtctttttcaagacagataaatcttctgcagcttcgatgactgagaattctggaatcaggaagatcctaccaaaatccgacat |
5912405 |
T |
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| Q |
218 |
ttgtgactttgaatttgaaccttgcgggtactcaatgaatggaattgaaggaagtgcaatatc |
280 |
Q |
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||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| |
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| T |
5912406 |
atgtgactttgaatttgaaccttgtgggtactcaatgaacggaattgaaggaagtgctatatc |
5912468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 19 - 280
Target Start/End: Complemental strand, 363130 - 362869
Alignment:
| Q |
19 |
ctgataagtcacaaatttggcacatttactctgccagtgctaagctagacgcttcaccggaagctgtctatggccttgaaatgtgcatgactggtttaga |
118 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
363130 |
ctgataagtcacaaatttggcacatttactctgctagtgctaagctagaagcttcaccggaagctgtctatggccttgaaatgtgcatgactggtttaga |
363031 |
T |
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| Q |
119 |
taaagaaaaagcatctgtgtttttcaagacagaaggatcttcagccggtttgatgaccaagaattctggaatcaggaagatccttccaaaatctgacatt |
218 |
Q |
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||||||||| ||||| |||||||||||| | || | ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
363030 |
taaagaaaaggcatcagtgtttttcaagtccgatgcatcttcagcaggtttgatgactaagaattctggaatcaggaagatccttccaaaatctgacatt |
362931 |
T |
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| Q |
219 |
tgtgactttgaatttgaaccttgcgggtactcaatgaatggaattgaaggaagtgcaatatc |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
362930 |
tgtgactttgaatttgaaccttgcgggtactcaatgaacggaattgagggaagtgcaatatc |
362869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0076 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 257
Target Start/End: Original strand, 4797 - 4871
Alignment:
| Q |
183 |
tctggaatcaggaagatccttccaaaatctgacatttgtgactttgaatttgaaccttgcgggtactcaatgaat |
257 |
Q |
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||||| |||||||| || |||||||| ||||| || ||||||||||| ||||||||||| || || ||||||||| |
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| T |
4797 |
tctggcatcaggaaaattcttccaaattctgaaatatgtgactttgattttgaaccttgtggttattcaatgaat |
4871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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