View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10753_high_1 (Length: 346)

Name: NF10753_high_1
Description: NF10753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10753_high_1
NF10753_high_1
[»] chr5 (6 HSPs)
chr5 (14-326)||(6611609-6611921)
chr5 (187-279)||(8249076-8249168)
chr5 (187-279)||(4926210-4926301)
chr5 (187-279)||(42457106-42457198)
chr5 (187-300)||(17972440-17972553)
chr5 (78-130)||(20709538-20709590)
[»] chr6 (4 HSPs)
chr6 (204-291)||(24638596-24638683)
chr6 (185-282)||(10303767-10303863)
chr6 (187-282)||(19153932-19154027)
chr6 (194-270)||(17293345-17293421)
[»] chr4 (6 HSPs)
chr4 (187-279)||(40434545-40434637)
chr4 (187-279)||(5634257-5634349)
chr4 (75-130)||(3018337-3018392)
chr4 (78-130)||(36887679-36887731)
chr4 (147-185)||(36887750-36887788)
chr4 (78-131)||(31944276-31944329)
[»] chr7 (3 HSPs)
chr7 (185-268)||(10274879-10274962)
chr7 (187-282)||(40682104-40682199)
chr7 (78-135)||(31852152-31852209)
[»] chr2 (5 HSPs)
chr2 (147-185)||(30958753-30958791)
chr2 (187-263)||(9584030-9584106)
chr2 (77-130)||(26236125-26236178)
chr2 (77-130)||(26560554-26560607)
chr2 (98-130)||(26136144-26136176)
[»] chr3 (4 HSPs)
chr3 (147-184)||(3424845-3424882)
chr3 (76-130)||(36990986-36991040)
chr3 (76-130)||(37016426-37016480)
chr3 (77-130)||(15328788-15328841)
[»] chr1 (3 HSPs)
chr1 (187-278)||(44889678-44889769)
chr1 (193-270)||(48611362-48611439)
chr1 (152-184)||(21091860-21091892)
[»] chr8 (1 HSPs)
chr8 (77-130)||(14767504-14767557)


Alignment Details
Target: chr5 (Bit Score: 159; Significance: 1e-84; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 14 - 326
Target Start/End: Original strand, 6611609 - 6611921
Alignment:
Q  14 acttttcttttagaggaaaataaagaatgcttacataccctctatttttggata---cactaaaaatagggttaatatttcttttgatccttgtaatatt 110  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||    ||||||||||||| ||||||||||||||||||| | |||||||    
T  6611609 acttttctttcagaggaaaataaagaatgcttacataccctctatttttggatgatgcactaaaaatagg-ttaatatttcttttgatccctataatatt 6611707  T
Q  111 aacgaattttggttttagtctttgtnnnnnnnnnnntagatttcatcactatcatttgagattcttccacttttgtgtgggagtggaggcggaggttgtt 210  Q
    | | |||||| |||||||||| |||           ||||||||| || |||||||||||||||||||||||||| ||||  | ||||||||||||||||    
T  6611708 agcaaatttttgttttagtctctgtaaaaaaaaa--tagatttcaacattatcatttgagattcttccacttttgggtggaggcggaggcggaggttgtt 6611805  T
Q  211 tgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttgcacgttgacaaggacaacagatgattatggaatctnnnnnnn 310  Q
    || |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||           
T  6611806 tgtgtgggaagatgagcagttgggggaactatgtttattacttcaaactgtgattttgcaggttgacaaggacgacagatgattatggaatctagaaaaa 6611905  T
Q  311 tctaatgatttctctg 326  Q
    ||||||||||||||||    
T  6611906 tctaatgatttctctg 6611921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 187 - 279
Target Start/End: Complemental strand, 8249168 - 8249076
Alignment:
Q  187 gtgggagtggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttgcacgttgacaa 279  Q
    |||| |||||||||||||||||||||| |||||||| || ||||||||||||  ||||||||| || |||| |||||||||||| ||||||||    
T  8249168 gtggaagtggaggcggaggttgtttgcatgggaagaggagcagttgggggaaaaatgtttattgcttcaaaatgtgattttgcaggttgacaa 8249076  T

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Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 187 - 279
Target Start/End: Original strand, 4926210 - 4926301
Alignment:
Q  187 gtgggagtggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttgcacgttgacaa 279  Q
    |||| |||||||||||||||||||||| ||||| || || ||||||||| ||||||||||| |||| |||| |||||||||||| ||||||||    
T  4926210 gtggaagtggaggcggaggttgtttgcatgggaggaggagcagttgggg-aactatgtttactacttcaaagtgtgattttgcaagttgacaa 4926301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 187 - 279
Target Start/End: Original strand, 42457106 - 42457198
Alignment:
Q  187 gtgggagtggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttgcacgttgacaa 279  Q
    |||| |||||||||||||||||||||||||||| || || ||| |||||||| |||||||||| || |||| ||||| |||||| ||||||||    
T  42457106 gtggaagtggaggcggaggttgtttgcgtgggaggaggagcaggtgggggaattatgtttattgcttcaaaatgtgactttgcaagttgacaa 42457198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 300
Target Start/End: Complemental strand, 17972553 - 17972440
Alignment:
Q  187 gtgggagtggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttgcacgttgacaaggacaac 286  Q
    |||| |||||||||| ||||||||||| |||||||| || ||| ||| |||| ||||| |||| || |||| |||||||||||| | |||||| ||  ||    
T  17972553 gtggaagtggaggcgaaggttgtttgcatgggaagaggagcagatggaggaattatgtctattgcttcaaaatgtgattttgcaggctgacaaagaggac 17972454  T
Q  287 agatgattatggaa 300  Q
    |||||  |||||||    
T  17972453 agatggatatggaa 17972440  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 130
Target Start/End: Complemental strand, 20709590 - 20709538
Alignment:
Q  78 agggttaatatttcttttgatccttgtaatattaacgaattttggttttagtc 130  Q
    ||||||||||  ||||||  ||| |||||||||||||||||||||||||||||    
T  20709590 agggttaatacctcttttcgtccatgtaatattaacgaattttggttttagtc 20709538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 204 - 291
Target Start/End: Original strand, 24638596 - 24638683
Alignment:
Q  204 ggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttgcacgttgacaaggacaacagatg 291  Q
    ||||| ||||||||||||| ||  |||| |||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||    
T  24638596 ggttgcttgcgtgggaagaggagaagttaggggaactatgtttattacttcaaactgtgattttgcaggttgacaaggacgacagatg 24638683  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 185 - 282
Target Start/End: Complemental strand, 10303863 - 10303767
Alignment:
Q  185 gtgtgggagtggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttgcacgttgacaagga 282  Q
    |||||| ||||||||||||||||||||| || | |||| || ||| ||||||||||  | |||||| |||||||||||| |||||| |||||||||||    
T  10303863 gtgtggaagtggaggcggaggttgtttgtgttg-aagaggagcaggtgggggaacttagattattagtccaaactgtgactttgcaggttgacaagga 10303767  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 187 - 282
Target Start/End: Complemental strand, 19154027 - 19153932
Alignment:
Q  187 gtgggagtggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttgcacgttgacaagga 282  Q
    |||| |||||||||| ||||||||||| |||||||| ||  || |||| ||||| |||||||||||  ||| ||||| ||| || ||| |||||||    
T  19154027 gtggaagtggaggcgaaggttgtttgcttgggaagaggataaggtgggagaactttgtttattacttgaaaatgtgaatttacaggttaacaagga 19153932  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 270
Target Start/End: Complemental strand, 17293421 - 17293345
Alignment:
Q  194 tggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttgca 270  Q
    |||||| |||||||||||||||||||||| ||   | ||||||||||  | |||||||| |||| ||||| ||||||    
T  17293421 tggaggtggaggttgtttgcgtgggaagaagagttggtgggggaacttaggttattacttcaaaatgtgactttgca 17293345  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 187 - 279
Target Start/End: Original strand, 40434545 - 40434637
Alignment:
Q  187 gtgggagtggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttgcacgttgacaa 279  Q
    |||| ||||||||||||||||||||||||||||||| ||  ||||||||||| |||||||||| || |||| | |||||||||| ||||||||    
T  40434545 gtggaagtggaggcggaggttgtttgcgtgggaagaggagtagttgggggaattatgtttattgcttcaaaatatgattttgcaggttgacaa 40434637  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 279
Target Start/End: Original strand, 5634257 - 5634349
Alignment:
Q  187 gtgggagtggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttgcacgttgacaa 279  Q
    |||| |||||||||||||| |||||| ||||||||| ||  || |||||||||||||||||||||| || | ||||| |||||| ||||||||    
T  5634257 gtggaagtggaggcggaggctgtttgtgtgggaagaggagaaggtgggggaactatgtttattacttcacaatgtgactttgcatgttgacaa 5634349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 75 - 130
Target Start/End: Complemental strand, 3018392 - 3018337
Alignment:
Q  75 aatagggttaatatttcttttgatccttgtaatattaacgaattttggttttagtc 130  Q
    |||||||||||||| ||||||  ||| |||||||||||||||||| ||||||||||    
T  3018392 aatagggttaatatctcttttcgtccctgtaatattaacgaatttcggttttagtc 3018337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 130
Target Start/End: Original strand, 36887679 - 36887731
Alignment:
Q  78 agggttaatatttcttttgatccttgtaatattaacgaattttggttttagtc 130  Q
    ||||||||||  ||||||| ||| |||||||||| ||||||||||||||||||    
T  36887679 agggttaatacctcttttggtccctgtaatattagcgaattttggttttagtc 36887731  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 185
Target Start/End: Original strand, 36887750 - 36887788
Alignment:
Q  147 tagatttcatcactatcatttgagattcttccacttttg 185  Q
    |||||| |||| |||||||||||||||||||||||||||    
T  36887750 tagattccatccctatcatttgagattcttccacttttg 36887788  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 131
Target Start/End: Complemental strand, 31944329 - 31944276
Alignment:
Q  78 agggttaatatttcttttgatccttgtaatattaacgaattttggttttagtct 131  Q
    ||||| |||| |||||||  |||||||||||||| ||||||| |||||||||||    
T  31944329 agggtaaatacttcttttcgtccttgtaatattagcgaatttcggttttagtct 31944276  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 185 - 268
Target Start/End: Original strand, 10274879 - 10274962
Alignment:
Q  185 gtgtgggagtggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttg 268  Q
    |||||| |||||||||| ||||||||||||||||| || ||   | ||||||||||  | ||||||||||||||||||| ||||    
T  10274879 gtgtggaagtggaggcgaaggttgtttgcgtgggaggaggaggtggtgggggaacttaggttattactccaaactgtgactttg 10274962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 282
Target Start/End: Original strand, 40682104 - 40682199
Alignment:
Q  187 gtgggagtggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttgcacgttgacaagga 282  Q
    |||| |||||||| ||||||||||||| ||||| || ||  || |||||||||| ||||||||||| |||| ||| | |||||| ||||| |||||    
T  40682104 gtggaagtggaggaggaggttgtttgcatgggaggaggagaaggtgggggaactttgtttattacttcaaaatgtaactttgcaggttgaaaagga 40682199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 135
Target Start/End: Complemental strand, 31852209 - 31852152
Alignment:
Q  78 agggttaatatttcttttgatccttgtaatattaacgaattttggttttagtctttgt 135  Q
    ||||||||||  ||||||  ||| |||||||||||||||||| |||||||||| ||||    
T  31852209 agggttaatacctcttttcgtccctgtaatattaacgaatttcggttttagtcattgt 31852152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 185
Target Start/End: Original strand, 30958753 - 30958791
Alignment:
Q  147 tagatttcatcactatcatttgagattcttccacttttg 185  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  30958753 tagatttcatccctatcatttgagattcttccacttttg 30958791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 263
Target Start/End: Complemental strand, 9584106 - 9584030
Alignment:
Q  187 gtgggagtggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtga 263  Q
    |||| |||||||||||||||||||||||||||| || || ||| ||| |||  |||||||||| || |||| |||||    
T  9584106 gtggaagtggaggcggaggttgtttgcgtgggaggaggagcaggtggtggatttatgtttattgcttcaaaatgtga 9584030  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 130
Target Start/End: Original strand, 26236125 - 26236178
Alignment:
Q  77 tagggttaatatttcttttgatccttgtaatattaacgaattttggttttagtc 130  Q
    |||||| ||||| ||||||  |||||||||||||| |||||| |||||||||||    
T  26236125 tagggtaaatatctcttttcgtccttgtaatattagcgaattctggttttagtc 26236178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 130
Target Start/End: Original strand, 26560554 - 26560607
Alignment:
Q  77 tagggttaatatttcttttgatccttgtaatattaacgaattttggttttagtc 130  Q
    |||||||||||| ||||||  ||| |||||||||||||||||| | ||||||||    
T  26560554 tagggttaatatctcttttcgtccctgtaatattaacgaatttcgattttagtc 26560607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 130
Target Start/End: Complemental strand, 26136176 - 26136144
Alignment:
Q  98 tccttgtaatattaacgaattttggttttagtc 130  Q
    |||||||||||||||||||||| ||||||||||    
T  26136176 tccttgtaatattaacgaatttcggttttagtc 26136144  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 147 - 184
Target Start/End: Original strand, 3424845 - 3424882
Alignment:
Q  147 tagatttcatcactatcatttgagattcttccactttt 184  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  3424845 tagatttcatccctatcatttgagattcttccactttt 3424882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 130
Target Start/End: Complemental strand, 36991040 - 36990986
Alignment:
Q  76 atagggttaatatttcttttgatccttgtaatattaacgaattttggttttagtc 130  Q
    |||||||||||| | |||||| ||| |||||||||| ||||||| ||||||||||    
T  36991040 atagggttaatactacttttggtccctgtaatattagcgaatttcggttttagtc 36990986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 130
Target Start/End: Complemental strand, 37016480 - 37016426
Alignment:
Q  76 atagggttaatatttcttttgatccttgtaatattaacgaattttggttttagtc 130  Q
    |||||||||||| | |||||| ||| |||||||||| ||||||| ||||||||||    
T  37016480 atagggttaatactacttttggtccctgtaatattagcgaatttcggttttagtc 37016426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 130
Target Start/End: Complemental strand, 15328841 - 15328788
Alignment:
Q  77 tagggttaatatttcttttgatccttgtaatattaacgaattttggttttagtc 130  Q
    |||||||||||  |||||| |||  |||||||||| ||||||||||||||||||    
T  15328841 tagggttaatacctcttttcatctctgtaatattagcgaattttggttttagtc 15328788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 187 - 278
Target Start/End: Complemental strand, 44889769 - 44889678
Alignment:
Q  187 gtgggagtggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttgcacgttgaca 278  Q
    |||| ||||||||| |||||| |||| ||||||||| ||  || | |||||||| ||||||||||| |||| ||| | |||||| |||||||    
T  44889769 gtggaagtggaggcagaggttatttgtgtgggaagaggagaaggtaggggaactttgtttattacttcaaaatgtaactttgcaggttgaca 44889678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 270
Target Start/End: Complemental strand, 48611439 - 48611362
Alignment:
Q  193 gtggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttgca 270  Q
    |||||||||||||||||| |||||||| || || | | |||  ||||| ||||||||||| |||| ||||| ||||||    
T  48611439 gtggaggcggaggttgttcgcgtgggaggaggatctggtggaagaactttgtttattacttcaaaatgtgactttgca 48611362  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 184
Target Start/End: Original strand, 21091860 - 21091892
Alignment:
Q  152 ttcatcactatcatttgagattcttccactttt 184  Q
    |||||| ||||||||||||||||||||||||||    
T  21091860 ttcatccctatcatttgagattcttccactttt 21091892  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 130
Target Start/End: Original strand, 14767504 - 14767557
Alignment:
Q  77 tagggttaatatttcttttgatccttgtaatattaacgaattttggttttagtc 130  Q
    |||||||||||  |||||| |||  |||||||||| ||||||||||||||||||    
T  14767504 tagggttaatacctcttttcatctctgtaatattagcgaattttggttttagtc 14767557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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