View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10753_high_3 (Length: 236)

Name: NF10753_high_3
Description: NF10753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10753_high_3
NF10753_high_3
[»] chr3 (2 HSPs)
chr3 (16-120)||(43142768-43142872)
chr3 (53-100)||(3658111-3658158)
[»] chr6 (1 HSPs)
chr6 (47-100)||(13026122-13026175)
[»] chr2 (1 HSPs)
chr2 (53-100)||(39014134-39014181)
[»] chr4 (1 HSPs)
chr4 (53-87)||(8239684-8239718)


Alignment Details
Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 43142872 - 43142768
Alignment:
Q  16 tacatcttctcaatcgatcctcttcctgattggcctttggtggatttggagacaccgcaatctcatgtgcctcggtaacgaaactttgtccttaacccag 115  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  43142872 tacatcttctcaattgatcctctttctgattggcctttggtggatttggagacaccgcaatctcatgtgcctcggtaacgaaacattgtccttaacccag 43142773  T
Q  116 ctgtg 120  Q
    |||||    
T  43142772 ctgtg 43142768  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 100
Target Start/End: Complemental strand, 3658158 - 3658111
Alignment:
Q  53 tggtggatttggagacaccgcaatctcatgtgcctcggtaacgaaact 100  Q
    ||||||||||||||||| |||||||||||||| || ||||| ||||||    
T  3658158 tggtggatttggagacaacgcaatctcatgtgtctaggtaatgaaact 3658111  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 13026175 - 13026122
Alignment:
Q  47 ggcctttggtggatttggagacaccgcaatctcatgtgcctcggtaacgaaact 100  Q
    ||||| ||||||||||||||||| |||||||||||||| || ||||| ||||||    
T  13026175 ggcctatggtggatttggagacaacgcaatctcatgtgtctaggtaatgaaact 13026122  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 100
Target Start/End: Original strand, 39014134 - 39014181
Alignment:
Q  53 tggtggatttggagacaccgcaatctcatgtgcctcggtaacgaaact 100  Q
    ||||||||||||||||| |||||||||||||| || ||||| ||||||    
T  39014134 tggtggatttggagacaacgcaatctcatgtgtctaggtaatgaaact 39014181  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 87
Target Start/End: Complemental strand, 8239718 - 8239684
Alignment:
Q  53 tggtggatttggagacaccgcaatctcatgtgcct 87  Q
    ||||||||||||||||||||||| |||||||||||    
T  8239718 tggtggatttggagacaccgcaacctcatgtgcct 8239684  T

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