View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10753_low_1 (Length: 406)
Name: NF10753_low_1
Description: NF10753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10753_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 38582386 - 38582774
Alignment:
| Q |
1 |
ctttccttagaggacaatttttggtaggnnnnnnnngcaccaatccacagtgcttaattaccctgcaattctatctatgagcttcaatgtaaagatatat |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38582386 |
ctttccttagaggacaatttttggtaggaaacaaaagcaccaatccagagtgcttaattaccctgcaattctatctatgagcttcaatgtaaagatatat |
38582485 |
T |
|
| Q |
101 |
tttgaactttgaagtagggaaatccacacttaaatcacagatttttgtggaggaaaaagcaccagtcttgttgatgcttaatcatatatttagaactatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38582486 |
tttgaactttgaagtagggaaatccacacttaaatcacagatttttgtggaggaaaaagcaccagtcttgttgatgcttaatcatatatttagaactatc |
38582585 |
T |
|
| Q |
201 |
acttgtaaatatatagttttggaagttatgagagtgtgaggggagcatatataaacataggatttgtcaaagttttattaatatattgctcaatcaccaa |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38582586 |
acttgtaaatatatagttttggaagttatgagagtgtgaggggagcatatataaacataggatttgtcaaagttttattaatatattgctcaatcaccaa |
38582685 |
T |
|
| Q |
301 |
aaacagatgcttagtatatttaccttaccttatgcagacataagtttttgatatctctgattctcatatgttagtgcaactctatatct |
389 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
38582686 |
aaacagatgcttagtatatttaccttaccttatgcagacataagtttttgatatctctgattctcatatgttagtgcaactatatatct |
38582774 |
T |
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