View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10753_low_3 (Length: 279)

Name: NF10753_low_3
Description: NF10753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10753_low_3
NF10753_low_3
[»] chr1 (3 HSPs)
chr1 (169-264)||(34026919-34027014)
chr1 (170-213)||(4060050-4060093)
chr1 (165-213)||(12449312-12449360)
[»] chr3 (8 HSPs)
chr3 (12-81)||(53694731-53694800)
chr3 (170-231)||(54308458-54308519)
chr3 (165-216)||(3584005-3584056)
chr3 (165-215)||(55325-55375)
chr3 (165-231)||(18745352-18745418)
chr3 (165-207)||(47571945-47571987)
chr3 (167-231)||(18744622-18744686)
chr3 (165-209)||(53344017-53344061)
[»] chr8 (7 HSPs)
chr8 (165-214)||(26847720-26847769)
chr8 (165-212)||(35399944-35399991)
chr8 (165-212)||(22632969-22633016)
chr8 (165-207)||(202577-202619)
chr8 (165-207)||(317414-317456)
chr8 (165-215)||(19220913-19220963)
chr8 (170-212)||(22632327-22632369)
[»] chr2 (2 HSPs)
chr2 (165-214)||(29387424-29387473)
chr2 (165-214)||(20606920-20606969)
[»] chr7 (3 HSPs)
chr7 (165-212)||(3849597-3849644)
chr7 (165-216)||(35892300-35892351)
chr7 (165-216)||(42818550-42818601)
[»] chr4 (7 HSPs)
chr4 (165-215)||(34450815-34450865)
chr4 (165-213)||(13924793-13924841)
chr4 (165-209)||(47157383-47157427)
chr4 (170-213)||(18363653-18363696)
chr4 (165-212)||(36248399-36248446)
chr4 (170-213)||(36599232-36599275)
chr4 (165-214)||(14527575-14527624)
[»] chr5 (7 HSPs)
chr5 (165-212)||(24565573-24565620)
chr5 (165-212)||(24606609-24606656)
chr5 (165-212)||(35524878-35524925)
chr5 (165-207)||(33087472-33087514)
chr5 (165-215)||(39466885-39466935)
chr5 (165-210)||(40372163-40372208)
chr5 (165-213)||(35524122-35524170)


Alignment Details
Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 169 - 264
Target Start/End: Complemental strand, 34027014 - 34026919
Alignment:
Q  169 aattctaggatgagggatcaattaaattcctcaccggtggaccacttaatttgagcgttagatcaaagtaagactactagatctgatagtcattat 264  Q
    ||||||||  |||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||    
T  34027014 aattctagagtgagagatcaattaagtccctcaccggtggaccacttaatttgagcgttagatcaaagtaagactacgagatctgatagttattat 34026919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 170 - 213
Target Start/End: Complemental strand, 4060093 - 4060050
Alignment:
Q  170 attctaggatgagggatcaattaaattcctcaccggtggaccac 213  Q
    ||||||||||||||| |||||||||| | |||||||||||||||    
T  4060093 attctaggatgagggctcaattaaatccgtcaccggtggaccac 4060050  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 213
Target Start/End: Complemental strand, 12449360 - 12449312
Alignment:
Q  165 ggtgaattctaggatgagggatcaattaaattcctcaccggtggaccac 213  Q
    |||| ||| |||| ||||||||||||||| | |||||||||||||||||    
T  12449360 ggtggattttagggtgagggatcaattaagtccctcaccggtggaccac 12449312  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 81
Target Start/End: Original strand, 53694731 - 53694800
Alignment:
Q  12 aaaggaagaggaacgattatggtttatggaacnnnnnnnnngtctctagtaatactcaaatcgagtttac 81  Q
    ||||||||||||| ||||||||||||||||||         |||||||||||||||||||||||||||||    
T  53694731 aaaggaagaggaatgattatggtttatggaacaaaaaaaaagtctctagtaatactcaaatcgagtttac 53694800  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 231
Target Start/End: Original strand, 54308458 - 54308519
Alignment:
Q  170 attctaggatgagggatcaattaaattcctcaccggtggaccacttaatttgagcgttagat 231  Q
    |||||||| |||||| |||||||| | ||||||||||| |||||||| ||||| ||||||||    
T  54308458 attctagggtgagggttcaattaagtccctcaccggtgaaccacttattttgaccgttagat 54308519  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 216
Target Start/End: Original strand, 3584005 - 3584056
Alignment:
Q  165 ggtgaattctaggatgagggatcaattaaattcctcaccggtggaccactta 216  Q
    |||| |||||||| ||||||| ||||||||| ||||||||||| ||||||||    
T  3584005 ggtggattctagggtgagggagcaattaaatccctcaccggtgtaccactta 3584056  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 215
Target Start/End: Complemental strand, 55375 - 55325
Alignment:
Q  165 ggtgaattctaggatgagggatcaattaaattcctcaccggtggaccactt 215  Q
    |||||||||||||||||||| |||||||| | |||||||| | ||||||||    
T  55375 ggtgaattctaggatgagggttcaattaagtccctcaccgatagaccactt 55325  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 231
Target Start/End: Complemental strand, 18745418 - 18745352
Alignment:
Q  165 ggtgaattctaggatgagggatcaattaaattcctcaccggtggaccacttaatttgagcgttagat 231  Q
    ||||||||||||| |||||| ||||| || | ||||||||||| |||||| ||||||| | ||||||    
T  18745418 ggtgaattctagggtgagggttcaatcaagtccctcaccggtgcaccactgaatttgaccattagat 18745352  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 207
Target Start/End: Complemental strand, 47571987 - 47571945
Alignment:
Q  165 ggtgaattctaggatgagggatcaattaaattcctcaccggtg 207  Q
    ||||||||||||| ||||||||||||||| | |||||||||||    
T  47571987 ggtgaattctagggtgagggatcaattaagtccctcaccggtg 47571945  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 231
Target Start/End: Original strand, 18744622 - 18744686
Alignment:
Q  167 tgaattctaggatgagggatcaattaaattcctcaccggtggaccacttaatttgagcgttagat 231  Q
    |||||||||||||||||| | ||| || | ||||||||||| |||||| ||||||| | ||||||    
T  18744622 tgaattctaggatgagggtttaatcaagtccctcaccggtgcaccactaaatttgaccattagat 18744686  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 209
Target Start/End: Original strand, 53344017 - 53344061
Alignment:
Q  165 ggtgaattctaggatgagggatcaattaaattcctcaccggtgga 209  Q
    |||| ||||||||||||||||||||| || | |||||||||||||    
T  53344017 ggtggattctaggatgagggatcaatcaagtccctcaccggtgga 53344061  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 214
Target Start/End: Complemental strand, 26847769 - 26847720
Alignment:
Q  165 ggtgaattctaggatgagggatcaattaaattcctcaccggtggaccact 214  Q
    |||| |||||||||||||||||||||||| ||||||||||||| ||||||    
T  26847769 ggtggattctaggatgagggatcaattaagttcctcaccggtgaaccact 26847720  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 212
Target Start/End: Complemental strand, 35399991 - 35399944
Alignment:
Q  165 ggtgaattctaggatgagggatcaattaaattcctcaccggtggacca 212  Q
    |||| ||||||||||||||||||||| |||| ||||||||||||||||    
T  35399991 ggtggattctaggatgagggatcaatcaaatccctcaccggtggacca 35399944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 212
Target Start/End: Complemental strand, 22633016 - 22632969
Alignment:
Q  165 ggtgaattctaggatgagggatcaattaaattcctcaccggtggacca 212  Q
    |||| |||||||| ||||||||||||||| | ||||||||||||||||    
T  22633016 ggtggattctagggtgagggatcaattaagtccctcaccggtggacca 22632969  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 207
Target Start/End: Original strand, 202577 - 202619
Alignment:
Q  165 ggtgaattctaggatgagggatcaattaaattcctcaccggtg 207  Q
    |||||||||||||||||||| |||||||| | |||||||||||    
T  202577 ggtgaattctaggatgagggttcaattaagtccctcaccggtg 202619  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 207
Target Start/End: Original strand, 317414 - 317456
Alignment:
Q  165 ggtgaattctaggatgagggatcaattaaattcctcaccggtg 207  Q
    |||||||||||||||||||| |||||||| | |||||||||||    
T  317414 ggtgaattctaggatgagggttcaattaagtccctcaccggtg 317456  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 19220913 - 19220963
Alignment:
Q  165 ggtgaattctaggatgagggatcaattaaattcctcaccggtggaccactt 215  Q
    |||||||||||||||||||| |||||||| | | |||||||| ||||||||    
T  19220913 ggtgaattctaggatgagggttcaattaagtccgtcaccggtagaccactt 19220963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 212
Target Start/End: Original strand, 22632327 - 22632369
Alignment:
Q  170 attctaggatgagggatcaattaaattcctcaccggtggacca 212  Q
    |||||||| ||||||||||||||| | ||||||||||||||||    
T  22632327 attctagggtgagggatcaattaagtccctcaccggtggacca 22632369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 214
Target Start/End: Original strand, 29387424 - 29387473
Alignment:
Q  165 ggtgaattctaggatgagggatcaattaaattcctcaccggtggaccact 214  Q
    ||||||||||||||||||||| | ||||| ||||||||||||||||||||    
T  29387424 ggtgaattctaggatgagggagctattaagttcctcaccggtggaccact 29387473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 214
Target Start/End: Complemental strand, 20606969 - 20606920
Alignment:
Q  165 ggtgaattctaggatgagggatcaattaaattcctcaccggtggaccact 214  Q
    ||||||||||||| |||||| |||||||| | ||||||||||| ||||||    
T  20606969 ggtgaattctagggtgagggttcaattaagtccctcaccggtgaaccact 20606920  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 212
Target Start/End: Original strand, 3849597 - 3849644
Alignment:
Q  165 ggtgaattctaggatgagggatcaattaaattcctcaccggtggacca 212  Q
    |||| ||||||||||||||||||||| |||| ||||||||||||||||    
T  3849597 ggtggattctaggatgagggatcaatcaaatccctcaccggtggacca 3849644  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 216
Target Start/End: Complemental strand, 35892351 - 35892300
Alignment:
Q  165 ggtgaattctaggatgagggatcaattaaattcctcaccggtggaccactta 216  Q
    |||| |||||||| ||||||| ||||||||| ||||||||||| ||||||||    
T  35892351 ggtggattctagggtgagggagcaattaaatccctcaccggtgtaccactta 35892300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 216
Target Start/End: Complemental strand, 42818601 - 42818550
Alignment:
Q  165 ggtgaattctaggatgagggatcaattaaattcctcaccggtggaccactta 216  Q
    ||||||||||||| |||||| |||||||| | ||||||||||||| ||||||    
T  42818601 ggtgaattctagggtgagggttcaattaagtccctcaccggtggatcactta 42818550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 34450815 - 34450865
Alignment:
Q  165 ggtgaattctaggatgagggatcaattaaattcctcaccggtggaccactt 215  Q
    ||||||||||||| ||||||||||||||| | ||||||||||||| |||||    
T  34450815 ggtgaattctagggtgagggatcaattaagtccctcaccggtggagcactt 34450865  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 213
Target Start/End: Original strand, 13924793 - 13924841
Alignment:
Q  165 ggtgaattctaggatgagggatcaattaaattcctcaccggtggaccac 213  Q
    |||| |||||||| |||||| |||||||||| |||||||||||||||||    
T  13924793 ggtggattctagggtgagggctcaattaaatccctcaccggtggaccac 13924841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 209
Target Start/End: Complemental strand, 47157427 - 47157383
Alignment:
Q  165 ggtgaattctaggatgagggatcaattaaattcctcaccggtgga 209  Q
    ||||||||||||| |||||| |||||||||| |||||||||||||    
T  47157427 ggtgaattctagggtgagggttcaattaaatccctcaccggtgga 47157383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 170 - 213
Target Start/End: Complemental strand, 18363696 - 18363653
Alignment:
Q  170 attctaggatgagggatcaattaaattcctcaccggtggaccac 213  Q
    |||||||| |||||| |||||||| |||||||||||||||||||    
T  18363696 attctagggtgagggttcaattaagttcctcaccggtggaccac 18363653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 212
Target Start/End: Original strand, 36248399 - 36248446
Alignment:
Q  165 ggtgaattctaggatgagggatcaattaaattcctcaccggtggacca 212  Q
    ||||||||||| | ||||||| ||||||||| ||||||||||||||||    
T  36248399 ggtgaattctaaggtgagggagcaattaaatccctcaccggtggacca 36248446  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 170 - 213
Target Start/End: Original strand, 36599232 - 36599275
Alignment:
Q  170 attctaggatgagggatcaattaaattcctcaccggtggaccac 213  Q
    |||||||| |||||| |||||||| |||||||||||||||||||    
T  36599232 attctagggtgagggttcaattaagttcctcaccggtggaccac 36599275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 214
Target Start/End: Complemental strand, 14527624 - 14527575
Alignment:
Q  165 ggtgaattctaggatgagggatcaattaaattcctcaccggtggaccact 214  Q
    |||| |||||||| ||||||||||||||| | ||||||||||| ||||||    
T  14527624 ggtggattctagggtgagggatcaattaagtccctcaccggtgaaccact 14527575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 212
Target Start/End: Original strand, 24565573 - 24565620
Alignment:
Q  165 ggtgaattctaggatgagggatcaattaaattcctcaccggtggacca 212  Q
    |||| |||||||| |||||| |||||||||| ||||||||||||||||    
T  24565573 ggtggattctagggtgagggttcaattaaatccctcaccggtggacca 24565620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 212
Target Start/End: Original strand, 24606609 - 24606656
Alignment:
Q  165 ggtgaattctaggatgagggatcaattaaattcctcaccggtggacca 212  Q
    |||| |||||||| |||||| |||||||||| ||||||||||||||||    
T  24606609 ggtggattctagggtgagggttcaattaaatccctcaccggtggacca 24606656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 212
Target Start/End: Complemental strand, 35524925 - 35524878
Alignment:
Q  165 ggtgaattctaggatgagggatcaattaaattcctcaccggtggacca 212  Q
    |||| |||||||| ||||||||||||||| || |||||||||||||||    
T  35524925 ggtggattctagggtgagggatcaattaagtttctcaccggtggacca 35524878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 207
Target Start/End: Complemental strand, 33087514 - 33087472
Alignment:
Q  165 ggtgaattctaggatgagggatcaattaaattcctcaccggtg 207  Q
    |||||||||||||||||||||||||| || | |||||||||||    
T  33087514 ggtgaattctaggatgagggatcaatcaagtccctcaccggtg 33087472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 39466885 - 39466935
Alignment:
Q  165 ggtgaattctaggatgagggatcaattaaattcctcaccggtggaccactt 215  Q
    ||||||||||||| ||||||  ||||||| | |||||||||||||||||||    
T  39466885 ggtgaattctagggtgagggtccaattaagtccctcaccggtggaccactt 39466935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 210
Target Start/End: Complemental strand, 40372208 - 40372163
Alignment:
Q  165 ggtgaattctaggatgagggatcaattaaattcctcaccggtggac 210  Q
    |||| |||||||| |||||| |||||||| ||||||||||||||||    
T  40372208 ggtggattctagggtgagggttcaattaagttcctcaccggtggac 40372163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 213
Target Start/End: Original strand, 35524122 - 35524170
Alignment:
Q  165 ggtgaattctaggatgagggatcaattaaattcctcaccggtggaccac 213  Q
    |||| ||||||||||||| | |||||||| | |||||||||||||||||    
T  35524122 ggtggattctaggatgagagttcaattaagtccctcaccggtggaccac 35524170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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