View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10753_low_5 (Length: 242)
Name: NF10753_low_5
Description: NF10753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10753_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 28 - 227
Target Start/End: Complemental strand, 14181068 - 14180869
Alignment:
| Q |
28 |
atatatataccattaactaattgatatttatgggtgatcgaggtccctagtcttgagattataatcttgaaaaactggctgaccaagctgaagataggga |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14181068 |
atatatataccattaactaattgatatttaagggtgatcgaggtccctagtcttgagattataatcttgaaaaactggctgaccaagctgaagataggga |
14180969 |
T |
|
| Q |
128 |
ttaacaggtgcagcaagttgaaggatcctgctaagtggttggtcctcaaaaaatgcaaactgatccatcacagccttgttttccatcactgccctatgct |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
14180968 |
ttaacaggtgcagcaagttgaaggatcctgctaagtggttggtcctcaaaaaatgcaaactgatccatcacagccttgttttccatcactgccttatgct |
14180869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University