View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10753_low_7 (Length: 232)
Name: NF10753_low_7
Description: NF10753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10753_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 36 - 217
Target Start/End: Complemental strand, 51273870 - 51273689
Alignment:
| Q |
36 |
cttgttatattgtcaagtttaggatcgaattttcggccaagaaaacacaatgaaatttgattttcaggagtagaaagattaagatttggtgagaacgaaa |
135 |
Q |
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| T |
51273870 |
cttgttatattgtcaagtttaggatcgaattttcggccaagaaaacacaatgaaatttgattttcaggagtagaaagattgagatttggtgagaacgaaa |
51273771 |
T |
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| Q |
136 |
tgagaagtttacgctttgagataaaattgaagtgccattttttctggttttcttgttctttcatttgttggagcaaagtatg |
217 |
Q |
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| T |
51273770 |
tgagaagtttacgctttgagataaaattgaagtgccattttttctggttttcttgttctttcatttgttggagcaaagtatg |
51273689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 180
Target Start/End: Original strand, 48403146 - 48403187
Alignment:
| Q |
139 |
gaagtttacgctttgagataaaattgaagtgccattttttct |
180 |
Q |
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| T |
48403146 |
gaagtttacactttgagataaaattgaagtgccattctttct |
48403187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 36 - 216
Target Start/End: Original strand, 5051497 - 5051676
Alignment:
| Q |
36 |
cttgttatattgtcaagtttaggatcgaattttcggccaagaaaacacaatgaaatttgattttcaggagtagaaagattaagatttggtgagaacgaaa |
135 |
Q |
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| T |
5051497 |
cttgttatattgtcgagtttagggtcgaattttcagcccagaaaactctaggaaatttggtttgcaggagtagaaagatggagattggatgagaaccata |
5051596 |
T |
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| Q |
136 |
tgagaagtttacgctttgagataaaattgaagtgccattttttctggttttcttgttctttcatttgttggagcaaagtat |
216 |
Q |
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| T |
5051597 |
cgaggagtttacgctttgagataaaattgaagtgcta-cttttctggttttcttcttctttcatttgttggaccaaagtat |
5051676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 36 - 138
Target Start/End: Complemental strand, 14907899 - 14907797
Alignment:
| Q |
36 |
cttgttatattgtcaagtttaggatcgaattttcggccaagaaaacacaatgaaatttgattttcaggagtagaaagattaagatttggtgagaacgaaa |
135 |
Q |
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|||||||||||||| |||||||| ||||||||||||| |||||||| ||| ||||||| |||||||||||||||||||| ||||| ||||||||||||| |
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| T |
14907899 |
cttgttatattgtcgagtttagggtcgaattttcggcaaagaaaactcaagtaaatttggttttcaggagtagaaagattgagattgggtgagaacgaaa |
14907800 |
T |
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| Q |
136 |
tga |
138 |
Q |
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||| |
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| T |
14907799 |
tga |
14907797 |
T |
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