View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10754_high_1 (Length: 393)
Name: NF10754_high_1
Description: NF10754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10754_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 17 - 384
Target Start/End: Original strand, 3125935 - 3126307
Alignment:
| Q |
17 |
accagttctttaagactgaagttgtgtcacctggtaatttcccagctcttcttttccttaatatttcctcccttacatcttcaattctcgacttaaaacc |
116 |
Q |
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| T |
3125935 |
accagttctttaagactgaagttgtgtcacctggtaatttcccagctcttcttttccttaatatttcctcccttacatcttcaattctcgacttaaaacc |
3126034 |
T |
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| Q |
117 |
ctacaaattaatacataaactcatttaataatttgtcattcaaagttaattatgaagagaagtaattaaaagataccatata-----gtaataaagaaag |
211 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
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| T |
3126035 |
ctacaaattaatacataaactcgtttaataatttgtcattcaaagttaattatgaagagaagtaattaacagataccatatactgtagtaataaagaaag |
3126134 |
T |
|
| Q |
212 |
aagtaagagtacagacctgtttgagctcaattttgagttcttgacgaactcgttccatgagtgacctttcagattcagtaggaagtaatggaccaagtcc |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3126135 |
aagtaagagtacagacctgtttgagctcaattttgagttcttgacgaactcgttccatgagtgacctttcagattcagtaggaagtaatggaccaagtcc |
3126234 |
T |
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| Q |
312 |
catcatgtcatgatcaccaccaccaccacttgactgattatctaaaccataatccatctgcaattgttcatct |
384 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3126235 |
catcatgtcatgatcaccaccaccaccacttgactgattatctaaaccataatccatctgcaattgttcatct |
3126307 |
T |
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