View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10754_low_1 (Length: 461)
Name: NF10754_low_1
Description: NF10754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10754_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 17 - 444
Target Start/End: Original strand, 35628287 - 35628714
Alignment:
| Q |
17 |
cacagattatgtaactatgaaagagtgagacaattaatccaagtccctagtatagtttatgtannnnnnnnnnnnnnnnnnnnnnnnataggccgattat |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
35628287 |
cacagattatgtaactatgaaagagtgagacaattaatccaagtccctagtatagtttatgtagtttttgtttttcttgtttgttttataggcagattat |
35628386 |
T |
|
| Q |
117 |
tagtaatttatttgttagggtgaagaagattggttagcctcagagatcaaatcttgaacttgttagttaaaaaatacttttttgatgtactaacacatac |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35628387 |
tagtaatttatttgttagggtgaagaagattggttagcctcagagatcaaatcttgaacttgttagttaaaaaatacttttttgatgtactaacacatac |
35628486 |
T |
|
| Q |
217 |
cacttgaataatcctttggacattcattgttttactttataattctaagtttggcaatctttttcttctttcaagggcaacgttgaattctttgtattta |
316 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35628487 |
cacttgaataatcctttggatattcattgttttactttataattctaagtttggcaatctttttcttctttcaagggcaacgttgaattctttgtattta |
35628586 |
T |
|
| Q |
317 |
tttcaaaatttcaatcctgtctctttctcatttgggctgttgaggaaattacatattgaaaccattcaactggggttagagctaaaagaaaatattcaca |
416 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
35628587 |
tttcaaaatttcaatcttgtctctttctcatttgggctgctgaggaaattacatattgaaaccattcaactggggttagagctaaaagaaagtattcaca |
35628686 |
T |
|
| Q |
417 |
tatgtgacagattattcaatgaccaaga |
444 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
35628687 |
tatgtgacagattattcaatgaccaaga |
35628714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University