View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10754_low_2 (Length: 393)
Name: NF10754_low_2
Description: NF10754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10754_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 17 - 384
Target Start/End: Original strand, 3125935 - 3126307
Alignment:
| Q |
17 |
accagttctttaagactgaagttgtgtcacctggtaatttcccagctcttcttttccttaatatttcctcccttacatcttcaattctcgacttaaaacc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3125935 |
accagttctttaagactgaagttgtgtcacctggtaatttcccagctcttcttttccttaatatttcctcccttacatcttcaattctcgacttaaaacc |
3126034 |
T |
|
| Q |
117 |
ctacaaattaatacataaactcatttaataatttgtcattcaaagttaattatgaagagaagtaattaaaagataccatata-----gtaataaagaaag |
211 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
3126035 |
ctacaaattaatacataaactcgtttaataatttgtcattcaaagttaattatgaagagaagtaattaacagataccatatactgtagtaataaagaaag |
3126134 |
T |
|
| Q |
212 |
aagtaagagtacagacctgtttgagctcaattttgagttcttgacgaactcgttccatgagtgacctttcagattcagtaggaagtaatggaccaagtcc |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3126135 |
aagtaagagtacagacctgtttgagctcaattttgagttcttgacgaactcgttccatgagtgacctttcagattcagtaggaagtaatggaccaagtcc |
3126234 |
T |
|
| Q |
312 |
catcatgtcatgatcaccaccaccaccacttgactgattatctaaaccataatccatctgcaattgttcatct |
384 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3126235 |
catcatgtcatgatcaccaccaccaccacttgactgattatctaaaccataatccatctgcaattgttcatct |
3126307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University